molemap 1.4.3.1

Bioconda integration

molemap 1.4.3

Optimization of parallel processing.

molemap 1.4.2

Added preset for Hifi reads to the index construction.

molemap 1.4.1

The indexing parameter -m was changed. It now defines the number of kmers from which a minimizer is chosen rather than the length of the sequence from which a minimizer is chosen. To achieve equivalent behaviour follow this formula: New_m = Old_m - k +1.
This change was done to be more in line with the definitions of popular tools using minimizers like minimap2.

molemap 1.4.0

Added the decon command for local barcode deconvolution.

molemap 1.3.0

• The tool bcmap was renamed to molemap.
• Molemap now supports gzipped input files.
• Molemap supports the mapping of long read sequencing data to sam format

bcmap 1.2.1

• added support of Iupac containing reference files.

bcmap 1.2.0

Optional coverage analysis added.
Optional sorting of output by mapping position added.
Support of readfiles with read in pair identifier ("\1" and "\2" at end of read Id) added.

bcmap 1.1.1

Updating parameter names to match publication.

bcmap 1.1.0

The Score has been changed to scale based on window length, hence the score is no longer biased towards longer fragments.
A score histogram is created by the map command. The histogram can be ploted using the provided python script and can be used to set a valid score threshold.