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DGTAC

Differential Gene Targets of Accessible Chromatin

bioRxiv link: https://www.biorxiv.org/content/10.1101/2021.11.16.468857v1

Usage

DGTAC.sh sampleList.csv peakCpm.csv bigwigFolder expressionTpm.csv cnvMatrix.csv finalModel.sav

Output

prediction matrix will be output into your working directory

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Differential Gene Targets of Accessible Chromatin

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  • Python 73.7%
  • Shell 15.4%
  • R 10.9%