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Determine database paths of third party software

Status: Open.

#111 In klebgenomics/Kleborate;

· KasperThystrup opened on Mar 19, 2026

Make a common output file, regardless of species

Status: Open.

#110 In klebgenomics/Kleborate;

· KasperThystrup opened on Mar 19, 2026

ezclermont not provided in bioconda installation

Status: Open.

#109 In klebgenomics/Kleborate;

· riccabolla opened on Mar 18, 2026

Wrong version of Biopython listed?

Status: Open.

#108 In klebgenomics/Kleborate;

· hkaspersen opened on Jan 14, 2026

EzClermont logic catching the wrong output

Status: Open.

#107 In klebgenomics/Kleborate;

· ealdraed opened on Jul 3, 2025

Run kleborate with a list of assemblies

Status: Open.

#98 In klebgenomics/Kleborate;

· HilaryESR opened on Mar 20, 2025

empty folder for kaptive in older kleborate versions

Status: Open.

#93 In klebgenomics/Kleborate;

· 95aastha opened on Jan 1, 2025

Very long headers in the FASTA are not parsed correctly

Status: Open.

#87 In klebgenomics/Kleborate;

· CorinYeatsCGPS opened on Oct 15, 2024

makeblastdb died with a Signals.SIGBUS: 7 error

Status: Open.

#80 In klebgenomics/Kleborate;

· taffners opened on Jul 2, 2024

Request: Default to 1 CPU thread

Status: Open.

#70 In klebgenomics/Kleborate;

· schorlton opened on May 10, 2023

Assertion error when trying to run with --resistance

Status: Open.

#69 In klebgenomics/Kleborate;

· lknegendorf opened on May 4, 2023

Kleborate Tutorial contains wrong description about incomplete matches

Status: Open.

#66 In klebgenomics/Kleborate;

· ealdraed opened on Jan 19, 2023