Miscellaneous software tools related to bioinformatics and data science.
A python script to report some timing information about a jobs submitted to an Sun Grid Engine (SGE) cluster. The output based on Jim Kent and Galt Barber's para command and the time option in the parasol batch system.
qtime h qtime - List timing information about a Sun Grid Engine job. usage: qtime [hD] -j [job_id|job_name|pattern]
qtime -j 574 Checking completed tasks for job 574 :' my.interesting.job ' Completed: 385 tasks Tasks failed: 0 ( 0 zero-time tasks ) Maximum task virtual memory usage: 4170.75M (max.) 3071.62M (avg.) Wallclock time in finished tasks: 15071677s 251194.62m 4186.58h 174.44d 0.48y User time (278.81%): 42021770s 700362.85m 11672.71h 486.36d 1.33y System time ( 20.84%): 3140756s 52345.93m 872.43h 36.35d 0.10y Average wallclock task time: 39147s 652.45m 10.87h 0.45d 0.00y Longest completed task: 357287s 5954.78m 99.25h 4.14d 0.01y Submission to last task: 3165773s 52762.88m 879.38h 36.64d 0.10y