MESA

This is a list of scripts used to filter and analyze MESA data

Name		Name	Last commit message	Last commit date
Latest commit History 39 Commits
00_gen2px.py		00_gen2px.py
01.1_mesa_dbgap_qc_pipeline_with_IBD		01.1_mesa_dbgap_qc_pipeline_with_IBD
01.2_plot_PCs		01.2_plot_PCs
01_GWAS_QC_plink.sh		01_GWAS_QC_plink.sh
02_make_new_expression_matrix_AFAmesa.R		02_make_new_expression_matrix_AFAmesa.R
03_peer_mesa.R		03_peer_mesa.R
04_MatrixEQTL_mesa.R		04_MatrixEQTL_mesa.R
05_make_combo_pops.py		05_make_combo_pops.py
06_make_predictDB_files.py		06_make_predictDB_files.py
07_run_elasticnet_v7		07_run_elasticnet_v7
08_pred_vs_obs.R		08_pred_vs_obs.R
README.md		README.md
UMich_vcf2px_noambig_singlesnp.py		UMich_vcf2px_noambig_singlesnp.py
run_04_MatrixEQTL_mesa.sh		run_04_MatrixEQTL_mesa.sh
working_plot_script.R		working_plot_script.R

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