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Update installation docs to recommend uv pip over conda #4

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maarten-devries merged 1 commit into from
Mar 23, 2026
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Update installation docs to recommend uv pip over conda #4

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10 changes: 5 additions & 5 deletions README.md
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Expand Up @@ -40,18 +40,18 @@ Please refer to the [documentation][link-docs].

## Installation

You need to have Python 3.11 or newer and a CUDA-capable GPU. We recommend installing in a [conda](https://docs.conda.io/en/latest/miniconda.html) environment with RAPIDS pre-installed.
You need to have Python 3.11 or newer and a CUDA-capable GPU.

1. Install the latest release on PyPI:
We recommend installing [rapids-singlecell](https://rapids-singlecell.readthedocs.io/en/latest/Installation.html) and `scib-rapids` using `uv pip` rather than conda, as conda often causes dependency conflicts (e.g. `cupy` vs `cupy-cuda12x`).

```bash
pip install scib-rapids
uv pip install rapids-singlecell scib-rapids
```

2. Install the latest development version:
Alternatively, install the latest development version:

```bash
pip install git+https://github.com/maarten-devries/scib-rapids.git@main
uv pip install rapids-singlecell git+https://github.com/maarten-devries/scib-rapids.git@main
```

## Release notes
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