[codex] Use cuGraph for Leiden clustering#7
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Summary
igraphLeiden implementation with a cuGraph-backed GPU implementation.cugraph.leidenwith the existing resolution and seed parameters.Notes
The old
n_jobsresolution sweep used CPU joblib workers. The GPU backend now runs the resolution sweep sequentially and warns whenn_jobsis set, avoiding multiple Python workers competing for the same GPU.Validation
uvx ruff format --check src/scib_rapids/metrics/_nmi_ari.py tests/test_metrics.py tests/test_cross_validate.pyuvx ruff check src/scib_rapids/metrics/_nmi_ari.py tests/test_metrics.py tests/test_cross_validate.pygit diff --checkpython3 -m py_compile src/scib_rapids/metrics/_nmi_ari.py tests/test_metrics.py tests/test_cross_validate.pyTargeted pytest could not run on this local machine because the local Python environment does not have CUDA RAPIDS packages installed (
cupy,cudf, andcugraphwere unavailable).