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Recombination Section Enhancements#10

Merged

btmonier merged 11 commits intomainmaize-genetics/seq_sim:mainfrom

recombination-modsmaize-genetics/seq_sim:recombination-modsCopy head branch name to clipboard

Jan 5, 2026

Conversation Commits11 (11)Checks Files changed

Merged

Recombination Section Enhancements#10
btmonier merged 11 commits intomainfrom
recombination-mods

Commits

Commits on Dec 18, 2025

Add a default assembly list option for "pick_crossover" step
btmonier
committed
Make parameter optional; update notes
btmonier
committed
Change MAF file input defaults
btmonier
committed
Update default assembly list location
btmonier
committed
Update default parameters
btmonier
committed
Fix filepath and .fa/.fasta issues
btmonier
committed
Rearrange steps
btmonier
committed
Add MAF conversion; improve default inputs
btmonier
committed
Fix output
btmonier
committed
Fix ropebwt keyfile issue
btmonier
committed

Commits on Dec 22, 2025

Remove on-the-fly regex
btmonier
committed

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