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General CLI fixes when building clikt executable#9

Merged

btmonier merged 8 commits intomainmaize-genetics/seq_sim:mainfrom

fix-clikt-climaize-genetics/seq_sim:fix-clikt-cliCopy head branch name to clipboard

Dec 17, 2025

Conversation Commits8 (8)Checks Files changed

Merged

General CLI fixes when building clikt executable#9
btmonier merged 8 commits intomainfrom
fix-clikt-cli

Commits

Commits on Dec 16, 2025

Remove all Gradle calls
btmonier
committed
Update MafToGvcf parameters
btmonier
committed
Fix commands with fully optional parameters.
btmonier
committed
Fix biokotlin-tools gzip naming extension
btmonier
committed
Fix appending issues
btmonier
committed

Commits on Dec 17, 2025

Fix logging issues; fix stale temp directory removal
btmonier
committed
Add missing parameter from "ConvertToFasta"
btmonier
committed
Fix syntax
btmonier
committed

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