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[pre-commit.ci] pre-commit autoupdate #39

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[pre-commit.ci] pre-commit autoupdate #39

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bd79d93
[pre-commit.ci] pre-commit autoupdate
pre-commit-ci[bot] Mar 16, 2026
d845924
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 16, 2026
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10 changes: 5 additions & 5 deletions .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
@@ -1,18 +1,18 @@
repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v4.3.0
rev: v6.0.0
hooks:
- id: check-yaml
- repo: https://github.com/snakemake/snakefmt
rev: v0.6.1
rev: v0.11.5
hooks:
- id: snakefmt
- repo: https://github.com/psf/black
rev: 22.6.0
- repo: https://github.com/psf/black-pre-commit-mirror
rev: 26.3.1
hooks:
- id: black
- repo: https://github.com/PyCQA/isort.git
rev: 5.10.1
rev: 8.0.1
hooks:
- id: isort
- repo: https://github.com/python-poetry/poetry
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5 changes: 0 additions & 5 deletions mccoy/workflow/rules/report.smk
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Expand Up @@ -53,26 +53,22 @@ rule report:
loader = jinja2.FileSystemLoader(report_dir)
env = jinja2.Environment(loader=loader, autoescape=jinja2.select_autoescape())


def include_file_unsafe(name):
if name:
return Path(str(name)).read_text()
return ""


def include_file(name):
if name:
return markupsafe.Markup(include_file_unsafe(name))
return ""


def include_raw(name):
if name:
file = report_dir / name
return markupsafe.Markup(file.read_text())
return ""


env.globals['include_file_unsafe'] = include_file_unsafe
env.globals['include_file'] = include_file
env.globals['include_raw'] = include_raw
Expand All @@ -90,7 +86,6 @@ rule report:
except Exception as err:
print(f"could not render template: {err}")


with open(output_path, 'w') as f:
print(f"Writing result to {output_path}")
f.write(result)
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