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[pull] develop from dermatologist:develop#63

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pull[bot] merged 1 commit into
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dermatologist:develop
Mar 13, 2026
Merged

[pull] develop from dermatologist:develop#63
pull[bot] merged 1 commit into
mederrata:developfrom
dermatologist:develop

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@pull pull Bot commented Mar 13, 2026

See Commits and Changes for more details.


Created by pull[bot] (v2.0.0-alpha.4)

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* feat: Add OMOP migration mapping template and example workflow

- Created mapping.template.json for defining source to OMOP mappings.
- Added ehr-to-omop-sample.md to demonstrate the migration process from a sample EHR to OMOP CDM.
- Documented mapping decisions in decisions.md for common EMR types.
- Introduced schema-guides.md to assist in interpreting source database schemas.
- Implemented validate_mapping.py script for validating migration results, including row counts, null checks, and concept coverage.
- Updated .gitignore to exclude backup directories.

* uv deps upgrade

* feat: Update workflow overview and add installation step for pyomop

* feat: Add copyskills.sh script to run dotagents

* feat: Add symbolic links for commands and skills in multiple directories

* feat: Update README to include skill-based mapping generation instructions

* feat: Update Agent Assisted ETL section to reflect beta status
@pull pull Bot locked and limited conversation to collaborators Mar 13, 2026
@pull pull Bot added the ⤵️ pull label Mar 13, 2026
@pull pull Bot merged commit 509753f into mederrata:develop Mar 13, 2026
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