ENH: Upgrade Pytorch Lightning to >=1.8

hi-ml-cpath/environment.yml

@@ -15,7 +15,8 @@ dependencies:
   - certifi=2022.9.24=py39h06a4308_0
   - cudatoolkit=11.3.1=h2bc3f7f_2
   - ffmpeg=4.2.2=h20bf706_0
-  - fontconfig=2.13.1=hef1e5e3_1
+  - flit-core=3.6.0=pyhd3eb1b0_0
+  - fontconfig=2.14.1=hef1e5e3_0
   - freetype=2.12.1=h4a9f257_0
   - gdk-pixbuf=2.42.6=h04a7f16_0
   - gettext=0.21.0=hf68c758_0
@@ -43,7 +44,6 @@ dependencies:
   - libtasn1=4.16.0=h27cfd23_0
   - libtiff=4.4.0=hecacb30_2
   - libunistring=0.9.10=h27cfd23_0
-  - libuuid=1.41.5=h5eee18b_0
   - libuv=1.40.0=h7b6447c_0
   - libvpx=1.7.0=h439df22_0
   - libwebp=1.2.4=h11a3e52_0
@@ -74,10 +74,10 @@ dependencies:
   - sqlite=3.40.0=h5082296_0
   - tk=8.6.12=h1ccaba5_0
   - torchvision=0.11.1=py39_cu113
-  - typing_extensions=4.3.0=py39h06a4308_0
+  - typing_extensions=4.4.0=py39h06a4308_0
   - tzdata=2022f=h04d1e81_0
   - x264=1!157.20191217=h7b6447c_0
-  - xz=5.2.6=h5eee18b_0
+  - xz=5.2.8=h5eee18b_0
   - zlib=1.2.13=h5eee18b_0
   - zstd=1.5.2=ha4553b6_0
   - pip:
@@ -111,7 +111,7 @@ dependencies:
     - azureml-dataprep-native==38.0.0
     - azureml-dataprep-rslex==2.11.4
     - azureml-dataset-runtime==1.47.0
-    - azureml-mlflow==1.47.0
+    - azureml-mlflow==1.48.0
     - azureml-telemetry==1.47.0
     - azureml-tensorboard==1.47.0
     - azureml-train-core==1.47.0
@@ -146,7 +146,8 @@ dependencies:
     - docutils==0.16
     - dotnetcore2==3.1.23
     - entrypoints==0.4
-    - filelock==3.8.0
+    - filelock==3.8.1
+    - fire==0.4.0
     - flake8==4.0.1
     - flask==2.2.2
     - frozenlist==1.3.3
@@ -155,7 +156,7 @@ dependencies:
     - girder-client==3.1.14
     - gitdb==4.0.10
     - gitpython==3.1.29
-    - google-api-core==2.10.2
+    - google-api-core==2.11.0
     - google-auth==1.35.0
     - google-auth-oauthlib==0.4.6
     - googleapis-common-protos==1.57.0
@@ -183,9 +184,10 @@ dependencies:
     - jsonschema==4.17.3
     - keyring==23.11.0
     - kiwisolver==1.4.4
-    - knack==0.10.0
+    - knack==0.10.1
     - lazy-object-proxy==1.8.0
     - lightning-bolts==0.4.0
+    - lightning-utilities==0.3.0
     - llvmlite==0.39.1
     - lxml==4.9.1
     - mako==1.2.4
@@ -205,7 +207,7 @@ dependencies:
     - msal-extensions==0.3.1
     - msrest==0.7.1
     - msrestazure==0.6.4
-    - multidict==6.0.2
+    - multidict==6.0.3
     - mypy==0.961
     - mypy-extensions==0.4.3
     - myst-parser==0.15.2
@@ -240,8 +242,7 @@ dependencies:
     - pycobertura==2.0.1
     - pycodestyle==2.8.0
     - pycparser==2.21
-    - pydash==5.1.1
-    - pydeprecate==0.3.2
+    - pydash==5.1.2
     - pydicom==2.3.0
     - pyflakes==2.4.0
     - pygments==2.13.0
@@ -258,7 +259,7 @@ dependencies:
     - pytest-rerunfailures==10.2
     - pytest-timeout==2.0.1
     - python-dateutil==2.8.2
-    - pytorch-lightning==1.6.5
+    - pytorch-lightning==1.8.3.post1
     - pytz==2022.6
     - pywavelets==1.4.1
     - pyyaml==6.0
@@ -300,6 +301,8 @@ dependencies:
     - tensorboard==2.6.0
     - tensorboard-data-server==0.6.1
     - tensorboard-plugin-wit==1.8.1
+    - tensorboardx==2.5.1
+    - termcolor==2.1.1
     - threadpoolctl==3.1.0
     - tifffile==2022.10.10
     - toml==0.10.2
@@ -318,5 +321,5 @@ dependencies:
     - wheel==0.36.2
     - wrapt==1.14.1
     - yacs==0.1.8
-    - yarl==1.8.1
+    - yarl==1.8.2
     - zipp==3.11.0

hi-ml-cpath/primary_deps.yml

@@ -20,7 +20,7 @@ dependencies:
       - pandas==1.3.4
       - pre-commit==2.19.0
       - protobuf==3.20.1
-      - pytorch-lightning>=1.6.0, <1.7
+      - pytorch-lightning>=1.8.0, <1.9
       - rpdb==0.1.6
       - setuptools==59.5.0
       # Run requirements for hi-ml-azure

hi-ml/run_requirements.txt

@@ -6,7 +6,7 @@ opencv-python-headless>=4.5.1.48
 pandas>=1.3.4
 pillow==9.3.0
 protobuf<4.0
-pytorch-lightning>=1.6.0, <1.7
+pytorch-lightning>=1.8.0, <1.9
 rpdb>=0.1.6
 torchvision>=0.10.0
 torch>=1.9.0