Discussions

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  Best practice for STAR export after CryoDRGN filtering and linking latent-space clusters to particle subsets?

  rijuaxt asked Feb 27, 2026 in Q&A · Unanswered

  

  

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  Automatically split the data to compute FSC

  vinith2 asked Apr 22, 2025 in Q&A · Unanswered

  

  

  

  

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  Question about using cryoDRGN with relion 5

  frozenfas asked Aug 21, 2024 in Q&A · Answered

  

  

  

  

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  Weird spherical reconstructions

  bow-zhang asked Mar 9, 2025 in Q&A · Answered

  

  

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  Incorporating a variable dose scheme in cryoET workflow

  shahpnmlab started Nov 6, 2024 in Ideas

  

  

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  Inconsistent mapping of volume PCA clusters to UMAP plot between analyze_landscape and analyze_landscape_full

  cbeck22 started Oct 16, 2024 in General

  

  

  

  

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  Could analyze_landscape auto-generate a Jupyter notebook like the cryoDRGN_filtering notebook created by cryodrgn_analyze?

  cbeck22 started Oct 9, 2024 in Ideas

  

  

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  When should we use larger encoder/decoder architectures?

  cbeck22 asked Sep 7, 2024 in Q&A · Answered

  

  

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  Question about multi-GPU command

  zhanghj59 asked Aug 31, 2024 in Q&A · Unanswered

  

  

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  Is it possible to obtain ensemble of protein structures through CryoDRGN?

  Immortals-33 asked Sep 3, 2024 in Q&A · Answered

  

  

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  PC transversal particle info trace back

  soothing35 asked Aug 26, 2024 in Q&A · Unanswered

  

  

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  particle filtering in jupyter notebook

  amadan24 asked Aug 13, 2024 in Q&A · Unanswered

  

  

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  Python script for generating simulated dataset

  SauravSJK asked Apr 26, 2024 in Q&A · Unanswered

  

  

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  How to compare CryoDRGN with CryoSPARC

  qhz991029 asked Apr 7, 2024 in Q&A · Answered

  

  

  

  

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  How to compare CryoDRGN with CryoSPARC

  qhz991029 started Apr 9, 2024 in General

  

  

  

  

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  neural network degradation with abinit_het

  oleuns started Dec 8, 2023 in Show and tell

  

  

  

  

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  cryoDRGN-ET 2D star file filtering

  ryanfeathers started Jan 17, 2024 in Ideas

  

  

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  relion star files of kmeans samples from cryoDRGN analysis?

  MauroItalia asked Nov 23, 2023 in Q&A · Unanswered

  

  

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  Convert some jupyter notebook functionality to standalone scripts

  zhonge started Nov 26, 2021 in Ideas

  

  

  

  

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  Can I edit the config.yaml file?

  Guillawme asked Sep 22, 2023 in Q&A · Unanswered

  

  

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  Using multiple optics group with cryodrgn

  Adwaith99 started Dec 5, 2022 in General

  

  

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  Graph traversal movies

  Guillawme started Oct 12, 2021 in Show and tell

  

  

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  Seaborn version

  RuizhiPeng asked Jun 18, 2023 in Q&A · Unanswered

  

  

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  Highpass filter for removing micelle/nanodisc contribution?

  olibclarke started Mar 25, 2023 in Ideas

  

  

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  analyze_convergence.py error

  robinbinchen asked Jan 17, 2023 in Q&A · Unanswered

  

  

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