Conversation
When you have a formula with only 1 atom of the element (let's say H2O or HPO4), the function "parse_formula(formula)" would crash with error "ValueError: invalid literal for int() with base 10: ''" in line 123 ("composition[_make_isotope_string(elem, int(isotope) if isotope else 0)] += int(number)"). Changing the line to: "composition[_make_isotope_string(elem, int(isotope) if isotope else 0)] += int(number) if number else 1" fixes that error
Owner
|
Thank you again for taking the time to read through and find the solution to your problem. I mention in my comment on #2 that the C-extension parser also has this issue, but would be much harder to fix. I can merge this PR if you don't plan to use the C extension and would still find this useful. |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
When you have a formula with only 1 atom of the element (let's say H2O or HPO4), the function "parse_formula(formula)" would crash in line 123
composition[_make_isotope_string(elem, int(isotope) if isotope else 0)] += int(number)with error:Changing the line to:
composition[_make_isotope_string(elem, int(isotope) if isotope else 0)] += int(number) if number else 1fixes that error