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ProcessGsRawData just randomly starts in the night (sometimes)

bug

Status: Open.

#356 In molgenis/NGS_Automated;

· RoanKanninga opened on Mar 26, 2026

CopyProjectDataToPrm is sometimes not producing a projectDataCopiedToPrm on tmp06

Status: Open.

#355 In molgenis/NGS_Automated;

· RoanKanninga opened on Feb 16, 2026

PullAndProcessGsAnalysisData.sh fails to process other batches when one batch is incomplete

Status: Open.

#311 In molgenis/NGS_Automated;

· pneerincx opened on May 1, 2024

trackandtrace curlresponse in shared function

Status: Open.

#201 In molgenis/NGS_Automated;

· RoanKanninga opened on Feb 4, 2021

CopyProjectDataToPrm: when checksum has failed the wrong path to file is showed

bug

Status: Open.

#194 In molgenis/NGS_Automated;

· RoanKanninga opened on Oct 19, 2020

Fix: Error handling for generate.sh

Status: Open.

#187 In molgenis/NGS_Automated;

· pneerincx opened on Jun 2, 2020

concordancecheck should accept all .vcf.gz

Status: Open.

#164 In molgenis/NGS_Automated;

· RoanKanninga opened on Jan 27, 2020

concordancecheck output link in DAT06

Status: Open.

#150 In molgenis/NGS_Automated;

· kdelange opened on Oct 15, 2019

FATAL error demultiplexing.sh CURLRESPONSE

Status: Open.

#127 In molgenis/NGS_Automated;

· kdelange opened on May 8, 2019

gendercheckfailed + rejectedsamples should also be added to umcg-atd.cfg

Status: Open.

#122 In molgenis/NGS_Automated;

· RoanKanninga opened on Apr 10, 2019

add samplesheet to rawdata in genomescan runs

Status: Open.

#116 In molgenis/NGS_Automated;

· RoanKanninga opened on Mar 25, 2019

when count on prm and tmp are not the same show differences

Status: Open.

#110 In molgenis/NGS_Automated;

· RoanKanninga opened on Jan 28, 2019