A series of analyses and data modification scripts to analyses STACKS output from pooled RAD population samples.
If you use any of these scripts, please cite the following publication:

Chu ND, Kalusiak ST, Trussell GC, and Vollmer SV. (in press) Phylogenomic analyses reveal latitudinal population structure and polymorphisms in heat stress genes in the North Atlantic snail Nucella lapillus. Molecular Ecology.