Feature/karen bacterial wrapper#237

Merged

joshfactorial merged 38 commits intodevelopfrom

feature/karen_bacterial_wrapper

Apr 27, 2026

Commits on Oct 4, 2025

Commits on Nov 12, 2025

Updated script to include paired-ended runs
karenhx2
committed

Commits on Dec 18, 2025

Implemented CLI for wrapper
karenhx2
committed

Commits on Jan 26, 2026

Removed extra copy of runner code
karenhx2
committed

Commits on Feb 1, 2026

Fixed bugs with config files and output stitching
karenhx2
committed

Commits on Feb 4, 2026

Merge branch 'develop' into feature/karen_bacterial_wrapper
joshfactorial
authored

Commits on Feb 12, 2026

Commits on Feb 22, 2026

Merge branch 'develop' of github.com:ncsa/NEAT into feature/karen_bacterial_wrapper
karenhx2
committed

Commits on Feb 26, 2026

Merge branch 'develop' of github.com:ncsa/NEAT into feature/karen_bacterial_wrapper
karenhx2
committed
Updated wrapper
karenhx2
committed
Developed script for wrapping bacterial chromosomes

karenhx2
authored and
joshfactorial
committed
Cleaned up files

karenhx2
authored and
joshfactorial
committed
Worked on testing functions for stitching outputs together

karenhx2
authored and
joshfactorial
committed
Removed reference and data files

karenhx2
authored and
joshfactorial
committed
Updated script to include paired-ended runs

karenhx2
authored and
joshfactorial
committed
Implemented CLI for wrapper

karenhx2
authored and
joshfactorial
committed
Removed extra copy of runner code

karenhx2
authored and
joshfactorial
committed
Fixed bugs with config files and output stitching

karenhx2
authored and
joshfactorial
committed
Finished final debugging

karenhx2
authored and
joshfactorial
committed
Accidentally removed poetry file and re-adding it

karenhx2
authored and
joshfactorial
committed
Updated wrapper

karenhx2
authored and
joshfactorial
committed
A couple of changes related to filetypes
joshfactorial
committed
Fixing a small error introduced by merging
joshfactorial
committed
Resolved merging conflicts
karenhx2
committed

Commits on Mar 5, 2026

Fixed pytest error with reuse splits
karenhx2
committed

Commits on Mar 25, 2026

merge conflict resolution
joshfactorial
committed

Commits on Mar 28, 2026

Commits on Apr 8, 2026

Merge branch 'develop' into feature/karen_bacterial_wrapper
joshfactorial
committed

Commits on Apr 10, 2026

Commits on Apr 27, 2026

Merge branch 'develop' into feature/karen_bacterial_wrapper
joshfactorial
authored