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Mar 6, 2026
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Staging#486
iamzoltan merged 7 commits intomainfrom
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@iamzoltan iamzoltan commented Mar 6, 2026

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actions-user and others added 3 commits March 2, 2026 01:59
@actions-user
Reprocess notebooks from PR #480
20c4aac 
These notebooks failed to process in the original PR and need reprocessing:
- tutorials/W2D4_Macrolearning/W2D4_Tutorial3.ipynb
@iamzoltan
Merge pull request #485 from neuromatch/reprocess-pr480-20260302015949
be83486 
Reprocess: Failed notebooks from PR #480
@iamzoltan
Use stub for ipywidgets in processing pipeline
4106b1b
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github-actions bot commented Mar 6, 2026

Notebook Processing Failure Context

tutorials/W2D4_Macrolearning/W2D4_Tutorial3.ipynb

2026-03-06T06:09:09.1878430Z Executing tutorials/W2D4_Macrolearning/W2D4_Tutorial3.ipynb
2026-03-06T06:09:11.3835346Z [Cell 4] # @title Tutorial slides
2026-03-06T06:09:11.4332995Z [Cell 6] # @title Install and import feedback gadget
2026-03-06T06:09:13.4053390Z tutorials/W2D4_Macrolearning/W2D4_Tutorial3.ipynb failed quality control.
2026-03-06T06:09:13.4054386Z An error occurred while executing the following cell:
2026-03-06T06:09:13.4054818Z ------------------
2026-03-06T06:09:13.4055182Z # @title Install and import feedback gadget
2026-03-06T06:09:13.4055470Z 
2026-03-06T06:09:13.4055624Z !pip install vibecheck datatops --quiet
2026-03-06T06:09:13.4055891Z 
2026-03-06T06:09:13.4056107Z from vibecheck import DatatopsContentReviewContainer
2026-03-06T06:09:13.4056602Z def content_review(notebook_section: str):
2026-03-06T06:09:13.4057123Z     return DatatopsContentReviewContainer(
2026-03-06T06:09:13.4057441Z         "",  # No text prompt
2026-03-06T06:09:13.4057686Z         notebook_section,
2026-03-06T06:09:13.4057910Z         {
2026-03-06T06:09:13.4058659Z             "url": "https://pmyvdlilci.execute-api.us-east-1.amazonaws.com/klab",
2026-03-06T06:09:13.4059085Z             "name": "neuromatch_neuroai",
2026-03-06T06:09:13.4059355Z             "user_key": "wb2cxze8",
2026-03-06T06:09:13.4059597Z         },
2026-03-06T06:09:13.4059778Z     ).render()
2026-03-06T06:09:13.4059893Z 
2026-03-06T06:09:13.4059898Z 
2026-03-06T06:09:13.4059991Z feedback_prefix = "W2D4_T3"
2026-03-06T06:09:13.4060238Z ------------------
2026-03-06T06:09:13.4060368Z 
2026-03-06T06:09:13.4060373Z 
2026-03-06T06:09:13.4060829Z �[0;31m---------------------------------------------------------------------------�[0m
2026-03-06T06:09:13.4061360Z �[0;31mImportError�[0m                               Traceback (most recent call last)
2026-03-06T06:09:13.4061788Z Cell �[0;32mIn[2], line 5�[0m
2026-03-06T06:09:13.4062208Z �[1;32m      1�[0m �[38;5;66;03m# @title Install and import feedback gadget�[39;00m
2026-03-06T06:09:13.4062939Z �[1;32m      3�[0m get_ipython()�[38;5;241m.�[39msystem(�[38;5;124m'�[39m�[38;5;124mpip install vibecheck datatops --quiet�[39m�[38;5;124m'�[39m)
2026-03-06T06:09:13.4064108Z �[0;32m----> 5�[0m �[38;5;28;01mfrom�[39;00m�[38;5;250m �[39m�[38;5;21;01mvibecheck�[39;00m�[38;5;250m �[39m�[38;5;28;01mimport�[39;00m DatatopsContentReviewContainer
2026-03-06T06:09:13.4064947Z �[1;32m      6�[0m �[38;5;28;01mdef�[39;00m�[38;5;250m �[39m�[38;5;21mcontent_review�[39m(notebook_section: �[38;5;28mstr�[39m):
2026-03-06T06:09:13.4065551Z �[1;32m      7�[0m     �[38;5;28;01mreturn�[39;00m DatatopsContentReviewContainer(
2026-03-06T06:09:13.4066082Z �[1;32m      8�[0m         �[38;5;124m"�[39m�[38;5;124m"�[39m,  �[38;5;66;03m# No text prompt�[39;00m
2026-03-06T06:09:13.4066512Z �[1;32m      9�[0m         notebook_section,
2026-03-06T06:09:13.4066982Z �[0;32m   (...)�[0m
2026-03-06T06:09:13.4067215Z �[1;32m     14�[0m         },
2026-03-06T06:09:13.4067516Z �[1;32m     15�[0m     )�[38;5;241m.�[39mrender()
2026-03-06T06:09:13.4067848Z ============================== Failure ==============================
2026-03-06T06:09:13.4068101Z 
2026-03-06T06:09:13.4068516Z File �[0;32m/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/vibecheck/__init__.py:4�[0m
2026-03-06T06:09:13.4069184Z �[1;32m      2�[0m �[38;5;28;01mimport�[39;00m�[38;5;250m �[39m�[38;5;21;01mdatetime�[39;00m
2026-03-06T06:09:13.4069867Z �[1;32m      3�[0m �[38;5;28;01mfrom�[39;00m�[38;5;250m �[39m�[38;5;21;01mdatatops�[39;00m�[38;5;250m �[39m�[38;5;28;01mimport�[39;00m Datatops
2026-03-06T06:09:13.4070682Z �[0;32m----> 4�[0m �[38;5;28;01mfrom�[39;00m�[38;5;250m �[39m�[38;5;21;01mipywidgets�[39;00m�[38;5;250m �[39m�[38;5;28;01mimport�[39;00m (
2026-03-06T06:09:13.4071204Z �[1;32m      5�[0m     Button,
2026-03-06T06:09:13.4071474Z �[1;32m      6�[0m     HBox,
2026-03-06T06:09:13.4085869Z �[1;32m      7�[0m     Label,
2026-03-06T06:09:13.4086288Z �[1;32m      8�[0m     VBox,
2026-03-06T06:09:13.4086696Z �[1;32m      9�[0m     Layout,
2026-03-06T06:09:13.4087023Z �[1;32m     10�[0m     ButtonStyle,
2026-03-06T06:09:13.4087325Z �[1;32m     11�[0m     Textarea,
2026-03-06T06:09:13.4087593Z �[1;32m     12�[0m     HTML,
2026-03-06T06:09:13.4087847Z �[1;32m     13�[0m     Output,
2026-03-06T06:09:13.4088089Z �[1;32m     14�[0m )
2026-03-06T06:09:13.4088773Z �[1;32m     15�[0m �[38;5;28;01mfrom�[39;00m�[38;5;250m �[39m�[38;5;21;01mIPython�[39;00m�[38;5;21;01m.�[39;00m�[38;5;21;01mdisplay�[39;00m�[38;5;250m �[39m�[38;5;28;01mimport�[39;00m display
2026-03-06T06:09:13.4089660Z �[1;32m     16�[0m �[38;5;28;01mfrom�[39;00m�[38;5;250m �[39m�[38;5;21;01mcollections�[39;00m�[38;5;250m �[39m�[38;5;28;01mimport�[39;00m Counter
2026-03-06T06:09:13.4090048Z 
2026-03-06T06:09:13.4090379Z �[0;31mImportError�[0m: cannot import name 'ButtonStyle' from 'ipywidgets' (unknown location)
2026-03-06T06:09:13.4090732Z 
2026-03-06T06:09:13.6658223Z ##[error]Process completed with exit code 1.

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github-actions bot commented Mar 6, 2026

Notebook Processing Failure Context

tutorials/W2D4_Macrolearning/W2D4_Tutorial3.ipynb

2026-03-06T06:39:35.5575996Z 
2026-03-06T06:39:35.5576086Z #working with data
2026-03-06T06:39:35.5576298Z import numpy as np
2026-03-06T06:39:35.5576530Z from functools import partial
2026-03-06T06:39:35.5576705Z 
2026-03-06T06:39:35.5576787Z #plotting
2026-03-06T06:39:35.5577312Z import matplotlib.pyplot as plt
2026-03-06T06:39:35.5577596Z import logging
2026-03-06T06:39:35.5577833Z from sklearn.decomposition import PCA
2026-03-06T06:39:35.5578146Z from matplotlib.lines import Line2D
2026-03-06T06:39:35.5578341Z 
2026-03-06T06:39:35.5578672Z #interactive display
2026-03-06T06:39:35.5578917Z import ipywidgets as widgets
2026-03-06T06:39:35.5579085Z 
2026-03-06T06:39:35.5579165Z #modeling
2026-03-06T06:39:35.5579349Z import torch
2026-03-06T06:39:35.5579543Z import torch.nn as nn
2026-03-06T06:39:35.5579781Z import torch.nn.functional as F
2026-03-06T06:39:35.5580059Z import torch.optim as optim
2026-03-06T06:39:35.5580357Z from torch.utils.data import Dataset, DataLoader
2026-03-06T06:39:35.5580704Z from sklearn.metrics import r2_score
2026-03-06T06:39:35.5580905Z 
2026-03-06T06:39:35.5580978Z #utils
2026-03-06T06:39:35.5581165Z from tqdm import tqdm
2026-03-06T06:39:35.5581382Z ------------------
2026-03-06T06:39:35.5581512Z 
2026-03-06T06:39:35.5581596Z ----- stdout -----
2026-03-06T06:39:35.5581963Z Unexpected exception formatting exception. Falling back to standard exception
2026-03-06T06:39:35.5582405Z ----- stderr -----
2026-03-06T06:39:35.5582635Z Traceback (most recent call last):
2026-03-06T06:39:35.5588538Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/IPython/core/interactiveshell.py", line 3579, in run_code
2026-03-06T06:39:35.5589233Z     exec(code_obj, self.user_global_ns, self.user_ns)
2026-03-06T06:39:35.5589659Z   File "/tmp/ipykernel_4905/2578735556.py", line 17, in <module>
2026-03-06T06:39:35.5589989Z     import torch
2026-03-06T06:39:35.5590476Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/torch/__init__.py", line 1750, in <module>
2026-03-06T06:39:35.5591013Z     from . import _meta_registrations
2026-03-06T06:39:35.5591587Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/torch/_meta_registrations.py", line 8, in <module>
2026-03-06T06:39:35.5592139Z     from torch._decomp import (
2026-03-06T06:39:35.5592667Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/torch/_decomp/__init__.py", line 190, in <module>
2026-03-06T06:39:35.5593221Z     import torch._decomp.decompositions
2026-03-06T06:39:35.5593819Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/torch/_decomp/decompositions.py", line 10, in <module>
2026-03-06T06:39:35.5594388Z     import torch._prims as prims
2026-03-06T06:39:35.5594926Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/torch/_prims/__init__.py", line 2968, in <module>
2026-03-06T06:39:35.5595464Z     register_debug_prims()
2026-03-06T06:39:35.5596034Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/torch/_prims/debug_prims.py", line 41, in register_debug_prims
2026-03-06T06:39:35.5596693Z     def load_tensor_factory(name, size, stride, dtype, device):
2026-03-06T06:39:35.5597582Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/torch/_custom_op/impl.py", line 330, in inner
2026-03-06T06:39:35.5598135Z     self._register_impl("factory", f)
2026-03-06T06:39:35.5598716Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/torch/_custom_op/impl.py", line 221, in _register_impl
2026-03-06T06:39:35.5599334Z     frame = inspect.getframeinfo(sys._getframe(stacklevel))
2026-03-06T06:39:35.5599864Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/inspect.py", line 1624, in getframeinfo
2026-03-06T06:39:35.5600325Z     lines, lnum = findsource(frame)
2026-03-06T06:39:35.5600989Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/inspect.py", line 952, in findsource
2026-03-06T06:39:35.5601453Z     module = getmodule(object, file)
2026-03-06T06:39:35.5601904Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/inspect.py", line 875, in getmodule
2026-03-06T06:39:35.5602338Z     f = getabsfile(module)
2026-03-06T06:39:35.5602754Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/inspect.py", line 844, in getabsfile
2026-03-06T06:39:35.5603239Z     _filename = getsourcefile(object) or getfile(object)
2026-03-06T06:39:35.5603750Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/inspect.py", line 820, in getsourcefile
2026-03-06T06:39:35.5604405Z     if any(filename.endswith(s) for s in all_bytecode_suffixes):
2026-03-06T06:39:35.5604927Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/inspect.py", line 820, in <genexpr>
2026-03-06T06:39:35.5605435Z     if any(filename.endswith(s) for s in all_bytecode_suffixes):
2026-03-06T06:39:35.5605861Z AttributeError: type object '_NoOpWidget' has no attribute 'endswith'
2026-03-06T06:39:35.5606140Z 
2026-03-06T06:39:35.5606317Z During handling of the above exception, another exception occurred:
2026-03-06T06:39:35.5606583Z 
2026-03-06T06:39:35.5606673Z Traceback (most recent call last):
2026-03-06T06:39:35.5607553Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/IPython/core/interactiveshell.py", line 2170, in showtraceback
2026-03-06T06:39:35.5608200Z     stb = self.InteractiveTB.structured_traceback(
2026-03-06T06:39:35.5608840Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/IPython/core/ultratb.py", line 1457, in structured_traceback
2026-03-06T06:39:35.5609443Z     return FormattedTB.structured_traceback(
2026-03-06T06:39:35.5610055Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/IPython/core/ultratb.py", line 1348, in structured_traceback
2026-03-06T06:39:35.5610648Z     return VerboseTB.structured_traceback(
2026-03-06T06:39:35.5611245Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/IPython/core/ultratb.py", line 1195, in structured_traceback
2026-03-06T06:39:35.5612020Z     formatted_exception = self.format_exception_as_a_whole(etype, evalue, etb, number_of_lines_of_context,
2026-03-06T06:39:35.5612843Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/IPython/core/ultratb.py", line 1085, in format_exception_as_a_whole
2026-03-06T06:39:35.5613547Z     self.get_records(etb, number_of_lines_of_context, tb_offset) if etb else []
2026-03-06T06:39:35.5614224Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/site-packages/IPython/core/ultratb.py", line 1153, in get_records
2026-03-06T06:39:35.5614779Z     mod = inspect.getmodule(cf.tb_frame)
2026-03-06T06:39:35.5615232Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/inspect.py", line 861, in getmodule
2026-03-06T06:39:35.5615679Z     file = getabsfile(object, _filename)
2026-03-06T06:39:35.5616139Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/inspect.py", line 844, in getabsfile
2026-03-06T06:39:35.5616633Z     _filename = getsourcefile(object) or getfile(object)
2026-03-06T06:39:35.5617359Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/inspect.py", line 829, in getsourcefile
2026-03-06T06:39:35.5617826Z     module = getmodule(object, filename)
2026-03-06T06:39:35.5618270Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/inspect.py", line 875, in getmodule
2026-03-06T06:39:35.5618703Z     f = getabsfile(module)
2026-03-06T06:39:35.5619119Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/inspect.py", line 844, in getabsfile
2026-03-06T06:39:35.5619602Z     _filename = getsourcefile(object) or getfile(object)
2026-03-06T06:39:35.5620102Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/inspect.py", line 820, in getsourcefile
2026-03-06T06:39:35.5620631Z     if any(filename.endswith(s) for s in all_bytecode_suffixes):
2026-03-06T06:39:35.5621292Z   File "/opt/hostedtoolcache/Python/3.10.19/x64/lib/python3.10/inspect.py", line 820, in <genexpr>
2026-03-06T06:39:35.5621796Z     if any(filename.endswith(s) for s in all_bytecode_suffixes):
2026-03-06T06:39:35.5622216Z AttributeError: type object '_NoOpWidget' has no attribute 'endswith'
2026-03-06T06:39:35.5622558Z ------------------
2026-03-06T06:39:35.5622681Z 
2026-03-06T06:39:35.5622686Z 
2026-03-06T06:39:35.5622690Z 
2026-03-06T06:39:35.5622810Z ============================== Failure ==============================
2026-03-06T06:39:35.8216637Z ##[error]Process completed with exit code 1.

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github-actions bot commented Mar 6, 2026

Notebook Processing Failure Context

tutorials/W2D4_Macrolearning/W2D4_Tutorial3.ipynb

2026-03-06T06:54:51.3601062Z Executing tutorials/W2D4_Macrolearning/W2D4_Tutorial3.ipynb
2026-03-06T06:54:52.9264432Z [Cell 4] # @title Tutorial slides
2026-03-06T06:54:52.9769693Z [Cell 6] # @title Install and import feedback gadget
2026-03-06T06:54:54.4558440Z [Cell 7] # @title Imports
2026-03-06T06:54:58.1809766Z [Cell 8] # @title Figure settings
2026-03-06T06:54:58.3559877Z [Cell 9] # @title Plotting functions
2026-03-06T06:54:58.3799472Z [Cell 10] # @title Helper functions
2026-03-06T06:54:58.3967940Z [Cell 11] # @title Data retrieval
2026-03-06T06:54:59.5496597Z [Cell 12] # @title Set random seed
2026-03-06T06:54:59.5579364Z [Cell 13] # @title Video 1: Meta-learning
2026-03-06T06:54:59.7794686Z [Cell 14] # @title Submit your feedback
2026-03-06T06:55:00.7814659Z tutorials/W2D4_Macrolearning/W2D4_Tutorial3.ipynb failed quality control.
2026-03-06T06:55:00.7815452Z ============================== Failure ==============================
2026-03-06T06:55:00.7816082Z An error occurred while executing the following cell:
2026-03-06T06:55:00.7816546Z ------------------
2026-03-06T06:55:00.7817439Z # @title Submit your feedback
2026-03-06T06:55:00.7832728Z content_review(f"{feedback_prefix}_meta_learning")
2026-03-06T06:55:00.7833243Z ------------------
2026-03-06T06:55:00.7833730Z 
2026-03-06T06:55:00.7833737Z 
2026-03-06T06:55:00.7834318Z �[0;31m---------------------------------------------------------------------------�[0m
2026-03-06T06:55:00.7835165Z �[0;31mAttributeError�[0m                            Traceback (most recent call last)
2026-03-06T06:55:00.7835806Z Cell �[0;32mIn[10], line 2�[0m
2026-03-06T06:55:00.7836349Z �[1;32m      1�[0m �[38;5;66;03m# @title Submit your feedback�[39;00m
2026-03-06T06:55:00.7837907Z �[0;32m----> 2�[0m �[43mcontent_review�[49m�[43m(�[49m�[38;5;124;43mf�[39;49m�[38;5;124;43m"�[39;49m�[38;5;132;43;01m{�[39;49;00m�[43mfeedback_prefix�[49m�[38;5;132;43;01m}�[39;49;00m�[38;5;124;43m_meta_learning�[39;49m�[38;5;124;43m"�[39;49m�[43m)�[49m
2026-03-06T06:55:00.7838999Z 
2026-03-06T06:55:00.7839407Z Cell �[0;32mIn[2], line 15�[0m, in �[0;36mcontent_review�[0;34m(notebook_section)�[0m
2026-03-06T06:55:00.7840438Z �[1;32m      6�[0m �[38;5;28;01mdef�[39;00m�[38;5;250m �[39m�[38;5;21mcontent_review�[39m(notebook_section: �[38;5;28mstr�[39m):
2026-03-06T06:55:00.7841711Z �[1;32m      7�[0m     �[38;5;28;01mreturn�[39;00m �[43mDatatopsContentReviewContainer�[49m�[43m(�[49m
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2026-03-06T06:55:00.7886907Z 
2026-03-06T06:55:00.7887303Z �[0;31mAttributeError�[0m: '_NoOpWidget' object has no attribute 'add_class'
2026-03-06T06:55:00.7887746Z 
2026-03-06T06:55:01.0217662Z ##[error]Process completed with exit code 1.

iamzoltan
iamzoltan commented Mar 6, 2026
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lgtm

@iamzoltan iamzoltan merged commit d89d6d9 into main Mar 6, 2026
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