Use augur subsample - #61
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joverlee521
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Jul 20, 2026
Augur subsample supports more complex subsampling patterns that are not supported by a single call to augur filter. This is a breaking change and the old configuration will no longer work.
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Note
Based on #60
Description of proposed changes
Augur subsample supports more complex subsampling patterns that are not supported by a single call to augur filter.
This is a breaking change and the old configuration will no longer work.
Draft changes on NW-PaGe fork: ff0e75d
Related issue(s)
Supersedes #45
Closes #44
Checklist