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Get rid of checksamplesheet.py and switch to nf-schema

enhancement

Status: Open.

#403 In nf-core/chipseq;

· JoseEspinosa opened on Jul 19, 2024

Make skip_preseq the default option

enhancement

Status: Open.

#456 In nf-core/chipseq;

· JoseEspinosa opened on Mar 13, 2025

JSON schema: Chipseq

docsDocumentationDocumentation

Status: Open.

#458 In nf-core/chipseq;

· jen-reeve opened on Mar 25, 2025

update nf-core/subworkflows ch_fasta -> ch_fasta_fai

enhancement

Status: Open.

Enhancement

#498 In nf-core/chipseq;

· Kevin-Brockers opened on Apr 2, 2026

bam_markduplicates_picard

enhancement

Status: Open.

#499 In nf-core/chipseq;

· Kevin-Brockers opened on Apr 2, 2026

bam_sort_stats_samtools

enhancement

Status: Open.

#500 In nf-core/chipseq;

· Kevin-Brockers opened on Apr 2, 2026

bam_stats_samtools

enhancement

Status: Open.

#501 In nf-core/chipseq;

· Kevin-Brockers opened on Apr 2, 2026

fastq_align_bowtie2

enhancement

Status: Open.

#502 In nf-core/chipseq;

· Kevin-Brockers opened on Apr 2, 2026

fastq_align_bwa

enhancement

Status: Open.

#503 In nf-core/chipseq;

· Kevin-Brockers opened on Apr 2, 2026

fastq_align_chromap

Status: Open.

#504 In nf-core/chipseq;

· Kevin-Brockers opened on Apr 2, 2026

Refactor pipeline to use ch_fasta_fai instead of ch_fasta

Status: Open.

#505 In nf-core/chipseq;

· Kevin-Brockers opened on Apr 2, 2026

Change remaining nf-core/modules and nf-core/subworkflow to handle versions topic channels

Status: Open.

Enhancement

#506 In nf-core/chipseq;

· Kevin-Brockers opened on Apr 2, 2026