Skip to content

Tetrameric model - #20

Open
zwefers wants to merge 15 commits into
release/v1.0.0from
tetrameric_model
Open

Tetrameric model#20
zwefers wants to merge 15 commits into
release/v1.0.0from
tetrameric_model

Conversation

@zwefers

@zwefers zwefers commented Jul 12, 2021

Copy link
Copy Markdown
Collaborator

Added tetrameric functionality

zwefers and others added 15 commits June 9, 2021 12:27
Change DB modules to handle both dimeric and tetrameric data. Checked that set_dependent_model in Bp Collection works for tetrameric data.
Added new constructors to StepParamsDB and ForceConstantsDB to take in higher dim db_data as input, updated ffield_packager and DNASimSerialization to handle tetrameric data.
Code now throws error if some tetramer is repeated in external file for ffield packagers. Code now uses "x" instead of "X" for unknown bp. Also added details to comments with my name.
Changed name of Tetrameric models and changed trimeric parameters to Cohen2017_dim parameters. Also added Cohen2017_dim internal model.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants