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Refactor GID handling and synapse seeding to align with Neurodamus#73

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ilkilic wants to merge 3 commits intomainfrom
neurodamus-gid-alignment
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Refactor GID handling and synapse seeding to align with Neurodamus#73
ilkilic wants to merge 3 commits intomainfrom
neurodamus-gid-alignment

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@ilkilic ilkilic commented Mar 20, 2026

Refactored GID handling and synapse seeding to make simulations deterministic and consistent with Neurodamus. Global GIDs are now computed from SONATA node populations (1-based with 1000 block offsets). This introduces a breaking change: post_gid is now required when creating synapses.

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