chore: Upgrade Python requirements

[edx-requirements-bot]

Python requirements update. Please review the changelogs for the upgraded packages.

Deleted obsolete pull_requests:
#289

[edx-requirements-bot]

List of packages in the PR without any issue.

• boto3 changes from 1.42.68 to 1.42.88
• botocore changes from 1.42.68 to 1.42.88
• build changes from 1.4.0 to 1.4.3
• charset-normalizer changes from 3.4.6 to 3.4.7
• click changes from 8.3.1 to 8.3.2
• coverage[toml] changes from 7.13.4 to 7.13.5
• cryptography changes from 46.0.5 to 46.0.7
• django changes from 5.2.12 to 5.2.13
• jaraco-context changes from 6.1.1 to 6.1.2
• nh3 changes from 0.3.3 to 0.3.4
• platformdirs changes from 4.9.4 to 4.9.6
• pygments changes from 2.19.2 to 2.20.0
• pytest changes from 9.0.2 to 9.0.3
• pytest-cov changes from 7.0.0 to 7.1.0
• python-discovery changes from 1.1.3 to 1.2.2
• requests changes from 2.32.5 to 2.33.1
• tox changes from 4.49.1 to 4.52.1
• virtualenv changes from 21.2.0 to 21.2.1
• werkzeug changes from 3.1.6 to 3.1.8

[edx-requirements-bot]

These Packages need manual review..

• [REMOVED] backports-tarfile (1.2.0) removed from the requirements
• [MAJOR] code-annotations changes from 2.3.2 to 3.0.0
• [REMOVED] importlib-metadata (8.7.1) removed from the requirements
• [MAJOR] more-itertools changes from 10.8.0 to 11.0.2
• [MAJOR] rich changes from 14.3.3 to 15.0.0
• [REMOVED] zipp (3.23.0) removed from the requirements