chore: Upgrade Python requirements

[edx-requirements-bot]

Python requirements update. Please review the changelogs for the upgraded packages.

Deleted obsolete pull_requests:
#549

[edx-requirements-bot]

List of packages in the PR without any issue.

• certifi changes from 2026.5.20 to 2026.6.17
• click changes from 8.4.1 to 8.4.2
• coverage[toml] changes from 7.14.1 to 7.15.0
• distlib changes from 0.4.0 to 0.4.3
• django changes from 5.2.14 to 5.2.15
• django-simple-history changes from 3.11.0 to 3.12.0
• faker changes from 40.19.1 to 40.28.1
• filelock changes from 3.29.0 to 3.29.5
• idna changes from 3.17 to 3.18
• pillow changes from 12.2.0 to 12.3.0
• pylint changes from 4.0.5 to 4.0.6
• pytest changes from 9.0.3 to 9.1.1
• python-discovery changes from 1.4.0 to 1.4.3
• stevedore changes from 5.8.0 to 5.9.0
• tox changes from 4.55.0 to 4.56.1
• typing-extensions changes from 4.15.0 to 4.16.0
• virtualenv changes from 21.4.2 to 21.5.1

[edx-requirements-bot]

These Packages need manual review..

• [MAJOR] cryptography changes from 48.0.0 to 49.0.0
• [MAJOR] setuptools changes from 82.0.1 to 83.0.0