Improve tracking of files in jobs

[mattwthompson]

Closes #109

[codecov-commenter]

Codecov Report

❌ Patch coverage is 55.00000% with 27 lines in your changes missing coverage. Please review.
✅ Project coverage is 69.75%. Comparing base (1f6b807) to head (3930c12).

Files with missing lines	Patch %	Lines
dimsim/compute/apps.py	27.02%	27 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #115      +/-   ##
==========================================
+ Coverage   69.26%   69.75%   +0.49%     
==========================================
  Files          19       20       +1     
  Lines        1604     1630      +26     
==========================================
+ Hits         1111     1137      +26     
  Misses        493      493              

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