Add GitHub Actions CI/CD: R-CMD-check and pkgdown

.Rbuildignore

@@ -0,0 +1,7 @@
+^\.github$
+^docs$
+^_pkgdown\.yml$
+^\.gitignore$
+^knockofftools\.Rproj$
+^LICENSE$
+^README\.md$

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,48 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+name: R-CMD-check
+
+permissions: read-all
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+    name: R-CMD-check (${{ matrix.config.os }}, ${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: ubuntu-latest, r: 'release'}
+          - {os: ubuntu-latest, r: 'oldrel-1'}
+          - {os: macos-latest,  r: 'release'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

.github/workflows/pkgdown.yaml

@@ -0,0 +1,45 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main]
+  workflow_dispatch:
+
+name: pkgdown
+
+permissions:
+  contents: write
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub Pages
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/github-pages-deploy-action@v4
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.gitignore

@@ -0,0 +1,15 @@
+# R session files
+.Rhistory
+.Rdata
+.RData
+.Ruserdata
+.Rproj.user
+
+# Built vignettes
+inst/doc
+
+# macOS
+.DS_Store
+
+# pkgdown site
+docs/

README.md

@@ -1,3 +1,7 @@
+<!-- badges: start -->
+[![R-CMD-check](https://github.com/openpharma/knockofftools/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/openpharma/knockofftools/actions/workflows/R-CMD-check.yaml)
+<!-- badges: end -->
+
 The `knockofftools` package
 ====================
 

_pkgdown.yml

@@ -1,4 +1,4 @@
-url: http://opensource.nibr.com/knockofftools/
+url: https://openpharma.github.io/knockofftools/
 template:
   bootstrap: 5