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@AI4SCR AI for Biomedical Research

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    19 repositories

    • xenium-hne-fusion

      Public
      TeX
      •
      MIT License
      •0•0•0•0•Updated Apr 30, 2026Apr 30, 2026

    • carot

      Public
      Addition to the Conditional Monge Gap to extend it to Chimeric Antigen Receptor T cell scRNAseq data
      single-celloptimal-transportcar-t
      single-celloptimal-transportcar-t
      Jupyter Notebook
      •
      MIT License
      •0•4•0•0•Updated Apr 29, 2026Apr 29, 2026

    • ai4bmr-learn

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Apr 28, 2026Apr 28, 2026

    • ai4bmr-datasets

      Public
      Python
      •
      MIT License
      •2•2•1•0•Updated Apr 21, 2026Apr 21, 2026

    • prostate-cancer-microenvironment

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 15, 2026Apr 15, 2026

    • conditional-monge-gap

      Public
      Learning conditional optimal transport maps
      single-celloptimal-transport
      single-celloptimal-transport
      Jupyter Notebook
      •
      MIT License
      •1•11•0•0•Updated Mar 31, 2026Mar 31, 2026

    • ATHENA

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •7•37•4•1•Updated Mar 16, 2026Mar 16, 2026

    • ai4bmr-core

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 25, 2026Feb 25, 2026

    • ProteinPNet

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Oct 31, 2025Oct 31, 2025

    • virtues

      Public
      A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical diagnostics, biologica…
      Python
      •
      Other
      •10•0•0•0•Updated Mar 24, 2025Mar 24, 2025

    • VirtualMultiplexer

      Public
      A generative toolkit to translate H&E images to multiplexed IHC
      Jupyter Notebook
      •
      MIT License
      •8•64•9•0•Updated Dec 11, 2024Dec 11, 2024

    • graph-concept-learner

      Public
      Graph Concept Learners
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Mar 19, 2024Mar 19, 2024

    • MatchCLOT

      Public
      Python package implementing our method MatchCLOT for multimodal single-cell data integration
      deep-learningsingle-cell-analysissingle-cell-multiomics
      deep-learningsingle-cell-analysissingle-cell-multiomics
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•14•0•0•Updated May 19, 2023May 19, 2023

    • ai4scr-data

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated May 12, 2023May 12, 2023

    • ChromFormer

      Public
      Jupyter Notebook
      •0•5•1•0•Updated Feb 8, 2023Feb 8, 2023

    • scQUEST

      Public
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Oct 13, 2022Oct 13, 2022

    • spatial-omics

      Public
      Python
      •0•1•0•0•Updated Jul 26, 2022Jul 26, 2022

    • tech3d

      Public
      Jupyter Notebook
      •2•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • dna-replication

      Public
      dna replication model - codebase
      Jupyter Notebook
      •
      MIT License
      •6•0•0•0•Updated Mar 22, 2020Mar 22, 2020
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