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    27 repositories

    • XspecT

      Public
      XspecT is a very fast, memory efficient and easy-to-use tool to taxonomically classify raw sequence-data, whole genome assemblies or metagenomes on the species …
      Python
      •
      MIT License
      •1•0•1•0•Updated Mar 27, 2026Mar 27, 2026

    • fDOG

      Public
      Feature-aware Directed OrtholoG search
      pythonorthology-inferenceorthologs
      pythonorthology-inferenceorthologsorthology
      Python
      •
      GNU General Public License v3.0
      •4•14•6•1•Updated Mar 24, 2026Mar 24, 2026

    • PhyloProfile

      Public
      A phylogenetic profile analysis tool
      visualizationbioinformaticsr
      visualizationbioinformaticsrshinyheatmapphylogenetic-profileinteractive-visualizationsorthologs
      R
      •
      Other
      •11•38•8•0•Updated Mar 11, 2026Mar 11, 2026

    • FAS

      Public
      FAS - Tool for Feature Architecture Similarity calculation
      proteinsprotein-domainsfeature-architectures
      proteinsprotein-domainsfeature-architecturesprotein-comparison
      Python
      •
      GNU General Public License v3.0
      •1•6•2•0•Updated Mar 6, 2026Mar 6, 2026

    • taXaminer

      Public
      Interactive exploration of biodiverse genome assemblies
      Python
      •
      MIT License
      •2•5•0•0•Updated Feb 25, 2026Feb 25, 2026

    • fCAT

      Public
      Python package for fCAT, a feature-aware completeness assessment tool
      Python
      •
      GNU General Public License v3.0
      •2•2•3•0•Updated Feb 25, 2026Feb 25, 2026

    • taxaminer-dashboard

      Public
      Web-based visualization and exploration of taXaminer datasets
      TypeScript
      •
      MIT License
      •2•1•3•0•Updated Feb 10, 2026Feb 10, 2026

    • sharingiscaring

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 9, 2025Dec 9, 2025

    • digital_competence

      Public
      Jupyter Notebook
      •2•0•0•1•Updated Oct 20, 2025Oct 20, 2025

    • phyloprofile-data

      Public
      Data files for PhyloProfile tool
      MIT License
      •1•1•0•0•Updated Oct 20, 2025Oct 20, 2025

    • PhyloProfileData

      Public
      The PhyloProfileData package provides a collection of datasets to accompany the PhyloProfile package
      R
      •
      Other
      •0•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • PhylopPCD

      Public
      R
      •
      MIT License
      •1•0•0•0•Updated May 14, 2025May 14, 2025

    • counTR

      Public
      counTR is a method to detect differential tandem repeat content between different groups of sequencing data
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 17, 2025Mar 17, 2025

    • dcc2

      Public
      Dynamic core orthologs compilation tool
      pythonorthology-inferenceoma
      pythonorthology-inferenceomaorthologyhamstrh1s
      Python
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Mar 12, 2025Mar 12, 2025

    • MATT

      Public
      MATT
      JavaScript
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Mar 7, 2025Mar 7, 2025

    • cell_wall

      Public
      Jupyter Notebook
      •2•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • bionf_cookiecutter

      Public
      A minimalist cookiecutter for research and data science projects
      Python
      •
      GNU General Public License v3.0
      •39•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • PhyloProfileCorona

      Public
      Lite version of PhyloProfile for corona data
      R
      •
      MIT License
      •2•0•0•0•Updated Feb 19, 2024Feb 19, 2024

    • PhyloRBF

      Public
      visualizationrphylogenetics
      visualizationrphylogeneticsribosome-profilingribosome
      R
      •
      MIT License
      •1•0•0•0•Updated Feb 19, 2024Feb 19, 2024

    • SPICE

      Public
      Tool that utilizes FAS on entire sets of transcripts to assess the impact of alternative splicing on proteome function.
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 23, 2023Oct 23, 2023

    • ncortho

      Public
      Targeted ortholog search for miRNAs
      Python
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Jul 18, 2023Jul 18, 2023

    • g_nom

      Public
      TypeScript
      •2•0•0•0•Updated Mar 29, 2023Mar 29, 2023

    • protTrace

      Public
      A simulation based framework to estimate the evolutionary traceability of protein.
      Python
      •4•4•1•0•Updated Sep 30, 2021Sep 30, 2021

    • HaMStR

      Public
      Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.
      orthology-inferencehomology-searchorthology
      orthology-inferencehomology-searchorthologyhomology
      Perl
      •
      GNU General Public License v3.0
      •2•9•7•0•Updated Oct 6, 2020Oct 6, 2020

    • conda-recipes

      Public
      Conda recipes
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 17, 2020Aug 17, 2020

    • python-novice-inflammation

      Public
      based on https://github.com/swcarpentry/python-novice-inflammation
      HTML
      •
      Other
      •3•0•0•0•Updated Dec 30, 2019Dec 30, 2019

    • REvolver

      Public
      REvolver is a protein sequence evolution simulation tool keeping constraint protein domains information.
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 21, 2016Dec 21, 2016
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