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    42 repositories

    • grn-robustness-audit

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated May 4, 2026May 4, 2026

    • maxtoki-atlas

      Public
      HTML
      •0•0•0•0•Updated May 3, 2026May 3, 2026

    • website

      Public
      HTML
      •0•0•0•0•Updated May 1, 2026May 1, 2026

    • novae-sae

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 19, 2026Apr 19, 2026

    • aido-mechinterp

      Public
      Mechanistic interpretability of AIDO.cell
      Python
      •0•0•0•0•Updated Apr 19, 2026Apr 19, 2026

    • plant-mechinterp

      Public
      Python
      •0•0•0•0•Updated Apr 19, 2026Apr 19, 2026

    • bio-sae-circuits

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • bio-sae

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Apr 14, 2026Apr 14, 2026

    • biomechinterp-framework

      Public
      Python
      •0•0•0•0•Updated Apr 14, 2026Apr 14, 2026

    • disagreement-arbitration

      Public
      Python
      •0•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • casual-intervention

      Public
      Causal token interventions for validating gene regulatory network inference from single-cell foundation models
      single-cellcausal-inferencegene-regulatory-networks
      single-cellcausal-inferencegene-regulatory-networksmechanistic-interpretabilityscgpt
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • novae-atlas

      Public
      JavaScript
      •0•0•0•0•Updated Apr 12, 2026Apr 12, 2026

    • two-axes

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 9, 2026Apr 9, 2026

    • neuro-sae

      Public
      Python
      •0•0•0•0•Updated Apr 3, 2026Apr 3, 2026

    • longevity-mechinterp

      Public
      Python
      •0•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • neuro-mechinterp

      Public
      Python
      •0•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • specialization-atlas

      Public
      TeX
      •
      MIT License
      •0•0•0•0•Updated Mar 12, 2026Mar 12, 2026

    • beyond-pairwise

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 12, 2026Mar 12, 2026

    • sae-biological-map

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 12, 2026Mar 12, 2026

    • manifold

      Public
      HTML
      •0•0•0•0•Updated Mar 12, 2026Mar 12, 2026

    • hema-manifold

      Public
      HTML
      •0•0•0•0•Updated Mar 3, 2026Mar 3, 2026

    • scgpt-atlas

      Public
      Interactive atlas of sparse autoencoder features from scGPT whole-human (33M cells). 24,576 features across 12 layers.
      TypeScript
      •0•0•0•0•Updated Feb 28, 2026Feb 28, 2026

    • geneformer-atlas

      Public
      TypeScript
      •0•0•0•0•Updated Feb 28, 2026Feb 28, 2026

    • grn-confound-audit

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 28, 2026Feb 28, 2026

    • topology-biomechinterp2

      Public
      Python
      •0•0•0•0•Updated Feb 25, 2026Feb 25, 2026

    • topology-biomechinterp1

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 24, 2026Feb 24, 2026

    • head-layer-specialization-atlas

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • grn-partial-label-metric-ceilings

      Public
      Reproducibility artifacts for partial-label metric ceilings in GRN evaluation
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • external-validation

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 22, 2026Feb 22, 2026

    • circuit-structure

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 22, 2026Feb 22, 2026
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