Repositories list

• assets_grants_common

  Public
  Typst templates and info for a grant repo

  Typst

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 26, 2026May 26, 2026

• plasmidsim

  Public
  Mozilla Public License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 17, 2026May 17, 2026

• microbiome2function

  Public
  UniProt-to-ML toolkit for microbiome function prediction with cleaning, embeddings, and GNN/FFNN data interfaces.

  Python

  •11 fork•11 star•11 issue•00 pull requests•Updated May 11, 2026May 11, 2026

• presentation_lab_meeting

  Public
  lesser lab meeting March 2026

  Typst

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 8, 2026May 8, 2026

• LabWebsite

  Public
  Website for the Bonham Lab at Tufts Medical Center

  CSS

  •11 fork•00 stars•11 issue•11 pull request•Updated May 3, 2026May 3, 2026

• presentation_DDW2026

  Public
  DDW May 2026 - The infant microbiome

  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 2, 2026May 2, 2026

• assets_child_brain_microbiome

  Public
  Project-specific assets for child brain microbiome presentations and documents

  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 2, 2026May 2, 2026

• assets_lab_general

  Public
  Project-specific assets for lab general presentations and documents

  Typst

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• assets_binfantis

  Public
  Project-specific assets for binfantis presentations and documents

  Typst

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 28, 2026Apr 28, 2026

• template_presentation

  Public template
  Typst template for typst-built presentations

  Typst

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 27, 2026Apr 27, 2026

• grant_pew_2026

  Public
  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 14, 2026Apr 14, 2026

• ObsidianXranklin.jl

  Public
  Julia

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 30, 2026Mar 30, 2026

• template_grant

  Public template
  NIH grant template for typst-generated documents

  TeX

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 18, 2026Mar 18, 2026

• presentation_gsbs_micro

  Public
  2025-09-17

  Typst

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 18, 2026Mar 18, 2026

• assets_stats_ML

  Public
  Project-specific assets for stats ML presentations and documents

  Typst

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 18, 2026Mar 18, 2026

• julia-data-workflow

  Public
  Julia Workflows for Data-Intensive Research

  Dockerfile

  •

  Other

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 3, 2026Feb 3, 2026

• biobakery-nextflow

  Public
  Nextflow

  •33 forks•44 stars•99 issues•11 pull request•Updated Dec 9, 2025Dec 9, 2025

• biobakery-containers

  Public
  Container description files for docker and apptainer for biobakery tools

  Dockerfile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 9, 2025Dec 9, 2025

• hutlab_reproWF

  Public
  Bonus Lab meeting on reproducible workflows

  Typst

  •00 forks•00 stars•00 issues•11 pull request•Updated Oct 27, 2025Oct 27, 2025

• template_letter

  Public template
  Tufts medicine and GSBS letterhead

  Typst

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 17, 2025Oct 17, 2025

• assets_cheese_hgt

  Public
  Project-specific assets for cheese hgt presentations and documents

  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 17, 2025Sep 17, 2025

• assets_career_experimental

  Public
  Project-specific assets for career experimental presentations and documents

  Typst

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 17, 2025Sep 17, 2025

• assets_spatial_omics

  Public
  Project-specific assets for spatial omics presentations and documents

  Typst

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 10, 2025Sep 10, 2025

• assets_julia_programming

  Public
  Project-specific assets for julia programming presentations and documents

  Typst

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 10, 2025Sep 10, 2025

• cv

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 11, 2025Jul 11, 2025

• biobakery-nextflow-fork

  Public
  Nextflow

  •33 forks•00 stars•00 issues•00 pull requests•Updated Jun 27, 2025Jun 27, 2025

• JuliaHubLessons

  Public
  Resources for lessons on transitioning from R to JuliaHub

  Julia

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 10, 2025Jun 10, 2025

• bhdsc_presntation

  Public
  Typst

  •00 forks•11 star•00 issues•00 pull requests•Updated May 28, 2025May 28, 2025

• TraineeTemplate

  Public template
  Template repository for trainees to track progress

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Apr 14, 2025Apr 14, 2025