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    11 repositories

    • hmseekr_manuscript

      Public
      Shell
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • hmseekr

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 3, 2026Mar 3, 2026

    • AKX_HNRNPU_manuscript

      Public
      codes for Modular protein-RNA associations reveal a requirement for HNRNPU in long-range Polycomb recruitment by the lncRNAs Airn, Kcnq1ot1, and Xist
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • Protocol-for-evaluating-RNA-protein-associations-in-mammalian-cells-with-RIP-seq-and-RIP-qPCR

      Public
      codes for the manuscript: Protocol for evaluating RNA-protein associations in mammalian cells with RIP-seq and RIP-qPCR
      Shell
      •
      MIT License
      •0•0•0•0•Updated Nov 11, 2025Nov 11, 2025

    • seekr2.0_update_manuscript

      Public
      Shell
      •
      MIT License
      •0•1•0•0•Updated Nov 11, 2025Nov 11, 2025

    • hmseekr0.5

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • Pipelines

      Public
      Shell
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • Airn_Xist_manuscript

      Public
      codes for figures and tables for "Protein-bridged recruitment of Polycomb repressive complexes by the lncRNAs Airn and Xist"
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

    • seekr

      Public
      A library for counting small kmer frequencies in nucleotide sequences.
      Python
      •
      MIT License
      •14•27•9•1•Updated Oct 29, 2024Oct 29, 2024

    • seekr_web

      Public
      Python
      •0•0•0•0•Updated Apr 3, 2019Apr 3, 2019

    • protocols

      Public
      Protocol documents detailing how to run experiments or manage infrastructure.
      0•0•0•0•Updated Apr 3, 2019Apr 3, 2019
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