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@CompBiochBiophLab Computational Biochemistry and Biophysics Lab

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    18 repositories

    • Tools

      Public
      A variety of (more or less curated) tools to make a computational biochemistry life slightly easier
      Jupyter Notebook
      •
      The Unlicense
      •0•0•0•0•Updated Apr 27, 2026Apr 27, 2026

    • sbm-openmm

      Public
      Python library to run structure based model (SBM) simulations using the OpenMM toolkit
      Jupyter Notebook
      •
      MIT License
      •8•23•2•0•Updated Jan 16, 2026Jan 16, 2026

    • CBBL-Poster

      Public template
      Template for conference posters from the Computational Biochemistry and Biophysics Lab at the UVic-UCC. Based on the Imperial College template
      TeX
      •1•0•0•0•Updated Oct 21, 2025Oct 21, 2025

    • ByoDyn

      Public
      software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Bioc…
      Python
      •
      MIT License
      •0•1•0•0•Updated Jul 29, 2025Jul 29, 2025

    • Adun

      Public
      high performance productivity molecular simulations code
      Objective-C
      •
      MIT License
      •0•0•0•0•Updated Jul 29, 2025Jul 29, 2025

    • TFG_Carla

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Mar 4, 2025Mar 4, 2025

    • Practiques-Anna-Moya

      Public
      1•0•0•0•Updated Sep 23, 2024Sep 23, 2024

    • qtools

      Public
      a Python library and CLI for the molecular dynamics simulation package Q
      Python
      •
      MIT License
      •10•0•0•0•Updated Sep 2, 2024Sep 2, 2024

    • IntroBioinfo

      Public
      Material for the Introduction to Bioinformatics course at the degree of Biomedical Sciences in UIC Barcelona
      Jupyter Notebook
      •2•0•0•0•Updated Mar 15, 2024Mar 15, 2024

    • Claudia_TFG_MTISCR

      Public
      Final BSc Project Development
      Jupyter Notebook
      •0•0•0•0•Updated Mar 15, 2024Mar 15, 2024

    • Toolsold

      Public
      scripts for common tasks within the lab
      Jupyter Notebook
      •
      The Unlicense
      •1•0•0•0•Updated Jun 14, 2023Jun 14, 2023

    • Differential-Expression-nautholsvik

      Public
      this is a description
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated May 24, 2023May 24, 2023

    • Jing-y-notebooks

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 15, 2023Mar 15, 2023

    • ByodynWeb

      Public
      web implementation of ByoDyn
      MIT License
      •0•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • pycbbl

      Public
      A multipurpose python library for the CBBL lab.
      Python
      •0•1•0•0•Updated Jun 29, 2021Jun 29, 2021

    • activa

      Public
      Java
      •1•0•0•0•Updated Feb 18, 2021Feb 18, 2021

    • RNAseq

      Public
      Shell
      •0•0•0•0•Updated Feb 18, 2020Feb 18, 2020

    • webprotgl

      Public
      WebGL-based protein viewer
      JavaScript
      •1•0•0•0•Updated Jul 4, 2016Jul 4, 2016
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