Repositories list

• fattacciolilab.github.io

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• 3DDroplets-Stress-Plugin--ImageJ

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• Rheoflupy

  Public
  Program to process Rheofluidic videos

  Jupyter Notebook

  •22 forks•00 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• klayout-microfluidic-components

  Public
  Library of reusable KLayout parametric components, generators, and Python macros for microfluidic, mask, and CAD layout design.

  pythonmicrofluidicsklayout+ 2

  pythonmicrofluidicsklayoutmicrofabricationmask-design

  Python

  •

  Other

  •11 fork•22 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• ids_uEye_camera

  Public
  Lightweight PyQt6 acquisition software for IDS uEye USB3 cameras — live preview, hardware ROI, timelapse/burst, 16-bit TIFF output with embedded metadata.

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 3, 2026Apr 3, 2026

• candidature-these

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 23, 2026Mar 23, 2026

• godec

  Public
  Background subtraction for fluorescence microscopy time-lapses and video sequences via low-rank sparse decomposition (GoDec / GreBsmo, Zhou & Tao 2013).

  pythonnumpyimage-processing+ 5

  pythonnumpyimage-processingscipybackground-subtractionvideo-analysislow-rank-decompositionsparse-decomposition

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 26, 2026Feb 26, 2026

• cytometry4emulsions

  Public
  Python package for sizing and fluorescence analysis of emulsion droplets by flow cytometry, based on Mie scattering theory (Fattaccioli et al., Soft Matter 2009…

  fluorescencemicrofluidicsbiophysics+ 5

  fluorescencemicrofluidicsbiophysicssoft-matterflow-cytometrydropletsmie-scatteringemulsion

  Python

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 26, 2026Feb 26, 2026

• nacres-assistant

  Public
  JavaScript

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 26, 2026Feb 26, 2026

• TrapTracker

  Public
  Micro-manager plugin to automatically track objects trapped in microfluidic traps, and release them.

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Oct 1, 2025Oct 1, 2025

• Background-Removal-Plugin---ImageJ

  Public
  Background-Removal plugin for ImageJ and ImageJ2 (Fiji)

  Java

  •22 forks•11 star•00 issues•00 pull requests•Updated Feb 7, 2024Feb 7, 2024

• 2022-PhenotypingBCellsWithLipidDroplets

  Public
  imagejrstudiophenotyping+ 4

  imagejrstudiophenotypingdxfmicrofluidicsimagej-macrobcell

  R

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 13, 2022Oct 13, 2022

• 2019-PlantsOnChip

  Public
  Related protocols and codes to the project of growing Plants on Chip (Sakai et al., Plant Methods, 2019)

  microscopydxfmicrofluidics

  microscopydxfmicrofluidics

  MATLAB

  •22 forks•11 star•00 issues•00 pull requests•Updated Jun 25, 2019Jun 25, 2019

• 2019-PhagocytosisQuantitation

  Public
  Phagocytosis quantitation code (Montel et al., Biophys J., 2019)

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 4, 2019Feb 4, 2019