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@FazalLabBCM Fazal Lab, BCM

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    4 repositories

    • ProcessCounts

      Public
      Process FASTQ read counts with DESeq2 (https://github.com/mikelove/DESeq2) to obtain enrichment values and an analysis summary full of quality-control figures
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 6, 2022Dec 6, 2022

    • TrimMapCount

      Public
      Trim, map, and count FASTQ reads with icSHAPE (https://github.com/qczhang/icSHAPE), STAR (https://github.com/alexdobin/STAR), and HTSeq (https://github.com/htse…
      rna-seq-pipelinerna-alignment
      rna-seq-pipelinerna-alignment
      Perl
      •
      MIT License
      •0•0•0•0•Updated Nov 29, 2022Nov 29, 2022

    • BamToBigWig

      Public
      Convert Bam files to normalized, united, and averaged BigWig files, which can be viewed using interactive tools such as the UCSC Genome Browser (https://genome.…
      Shell
      •
      MIT License
      •0•0•0•0•Updated Oct 20, 2022Oct 20, 2022

    • FazalLabPipelines

      Public
      Instructions for when and how to use use each of the Fazal Lab pipelines
      0•0•0•0•Updated Aug 18, 2022Aug 18, 2022
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