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    16 repositories

    • anonymise

      Public
      A program to edit fields in a bam file
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      Python
      •
      Other
      •1•0•0•0•Updated Mar 21, 2019Mar 21, 2019

    • h3agatk

      Public
      Common Workflow Language
      •
      MIT License
      •13•0•0•0•Updated Jan 8, 2019Jan 8, 2019

    • BrokenWorkflow

      Public
      Generates a DNAnexus workflow that is broken (has a missing stage), for testing purposes
      Python
      •0•0•0•0•Updated Aug 14, 2018Aug 14, 2018

    • cpipe

      Public
      The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline
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      Python
      •
      Other
      •13•33•27•3•Updated Jan 20, 2018Jan 20, 2018

    • dx-toolkit

      Public
      DNAnexus platform client libraries
      Python
      •
      Apache License 2.0
      •91•0•0•0•Updated Jul 18, 2017Jul 18, 2017

    • chrReplace

      Public
      Adds or removes "chr" prefixes from a column of a CSV (e.g. GFF/BED files)
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 23, 2017Jun 23, 2017

    • pandas_diff

      Public
      Joins two CSVs by an arbitrary index and calculates where they differ
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 22, 2017Jun 22, 2017

    • python-assets

      Public
      A python 3 module for managing and installing assets from various sources
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 3, 2017May 3, 2017

    • groovy-hts-sample-info

      Public
      dont-move
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      Groovy
      •
      MIT License
      •1•0•0•0•Updated Apr 5, 2017Apr 5, 2017

    • dx-vep

      Public
      A VEP (Ensembl Variant Effect Predictor) app for the DNA Nexus Platform
      Python
      •
      GNU General Public License v3.0
      •3•1•0•0•Updated Mar 9, 2017Mar 9, 2017

    • dx-asset-vep-cache

      Public
      hg38 Vep Cache
      Makefile
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 7, 2017Mar 7, 2017

    • UcscBed

      Public
      A bioinformatics library that provides a CLI and API for creating a BED file out of the UCSC refseq genes list
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 20, 2017Feb 20, 2017

    • dx-asset-bedtools

      Public
      Bedtools asset for DNA Nexus
      Makefile
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 17, 2017Feb 17, 2017

    • groovy-ngs-utils

      Public
      A collection of utilities for working with next generation (MPS) sequencing data in Groovy
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      Groovy
      •
      GNU Lesser General Public License v2.1
      •9•0•0•0•Updated Jan 7, 2017Jan 7, 2017

    • iq

      Public
      QC generation system
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      Python
      •1•0•0•0•Updated Nov 18, 2016Nov 18, 2016

    • gap_analysis

      Public
      Finds overall gaps in multiple aligned samples
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      dont-move
      Python
      •1•0•0•0•Updated Nov 15, 2016Nov 15, 2016
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