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    16 repositories

    • NeoSTAR

      Public
      Code used to produce scRNA, ORION, and WES figures in the NeoSTAR Phase II clinical trial of sacituzumab govitecan in TNBC
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 17, 2026Feb 17, 2026

    • Multi-region-GBM

      Public
      Source code for "Multi-region biopsies and patient-derived neurosphere cultures reveal spatial divergence in glioblastoma"
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026

    • radiotherapy-induced-cell-migration

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

    • PROFET

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jul 31, 2025Jul 31, 2025

    • estipop

      Public
      ESTIpop is an R-wrapped C++ package to simulate and estimate the parameters of continuous-time Markov branching processes with time-dependent rates.
      R
      •
      GNU General Public License v3.0
      •2•5•0•0•Updated May 28, 2025May 28, 2025

    • OT-EMT

      Public
      Jupyter Notebook
      •
      MIT License
      •2•2•0•0•Updated Jul 18, 2024Jul 18, 2024

    • TCRSeqBC

      Public
      TCR Sequence Breast Cancer Project
      Jupyter Notebook
      •1•0•0•0•Updated Oct 30, 2023Oct 30, 2023

    • Optimal_Schedule_ER-positive

      Public
      R
      •
      MIT License
      •1•1•0•0•Updated Apr 10, 2023Apr 10, 2023

    • GBM_OR_immune

      Public
      Mathematica
      •
      MIT License
      •2•0•0•0•Updated Feb 7, 2023Feb 7, 2023

    • H3K36_methylation_scRNAseq

      Public
      R
      •
      MIT License
      •1•1•0•0•Updated Feb 4, 2023Feb 4, 2023

    • ACESO

      Public
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 2, 2021Jun 2, 2021

    • NSCLC_OsimDacoOptimization

      Public
      R
      •1•2•0•0•Updated Apr 6, 2021Apr 6, 2021

    • AML_scheduleOptimization

      Public
      This project looks at the pairwise combination of 3 potential candidates for AML therapy.
      R
      •1•0•0•0•Updated Jul 21, 2020Jul 21, 2020

    • evo_sim

      Public
      C++
      •
      MIT License
      •1•2•0•0•Updated Jul 18, 2019Jul 18, 2019

    • tnbc_scrnaseq

      Public
      R
      •
      GNU General Public License v3.0
      •38•42•0•0•Updated Oct 12, 2018Oct 12, 2018

    • tnbc-scrnaseq

      Public
      0•0•0•0•Updated Jul 12, 2018Jul 12, 2018
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