Repositories list

• laxy

  Public
  Laxy Genomics Pipelines

  Python

  •

  Apache License 2.0

  •11 fork•44 stars•6262 issues•00 pull requests•Updated May 4, 2026May 4, 2026

• ShinyCellModular

  Public
  ShinyCellModular is a modular version of ShinyCell developed at MGBP. It supports large scRNAseq and multimodal datasets with fast on-demand HDF5 access, extend…

  HTML

  •11 fork•11 star•00 issues•11 pull request•Updated Apr 28, 2026Apr 28, 2026

• learning-resource-links

  Public
  An awesome list of learning resources for bioinformatics, genomics and computational biology

  55 forks•2525 stars•00 issues•00 pull requests•Updated Apr 15, 2026Apr 15, 2026

• sc-hyp-org

  Public
  This repository contains detailed code for the analysis of scRNAseq data

  HTML

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 14, 2026Apr 14, 2026

• rocker-ultra

  Public
  Containerised RStudio with bells+whistles for HPC and everywhere

  Dockerfile

  •

  GNU General Public License v2.0

  •44 forks•66 stars•66 issues•22 pull requests•Updated Mar 27, 2026Mar 27, 2026

• RNAseq_workshop

  Public
  HTML

  •11 fork•11 star•00 issues•00 pull requests•Updated Mar 17, 2026Mar 17, 2026

• trimviz

  Public
  Visualisation of trimming or soft-clipping of short sequence reads

  Python

  •

  GNU General Public License v3.0

  •11 fork•22 stars•00 issues•00 pull requests•Updated Dec 11, 2025Dec 11, 2025

• Functional_Enrichment_Online_Tools

  Public
  HTML

  •33 forks•00 stars•00 issues•00 pull requests•Updated Nov 13, 2025Nov 13, 2025

• monashbioinformaticsplatform.github.io

  Public
  Main Page

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 29, 2025Aug 29, 2025

• scRNAseq_Workshop

  Public
  Single cell RNAseq workshop

  HTML

  •33 forks•00 stars•11 issue•00 pull requests•Updated Aug 27, 2025Aug 27, 2025

• Single-Cell-Workshop

  Public
  Half day workshop with 10x

  R

  •

  GNU General Public License v3.0

  •11 fork•11 star•44 issues•00 pull requests•Updated Aug 27, 2025Aug 27, 2025

• scRNAseq_Workshop_ABACBS_2024

  Public archive
  Single cell RNAseq workshop for ABACBS 2024

  HTML

  •33 forks•00 stars•00 issues•00 pull requests•Updated Aug 22, 2025Aug 22, 2025

• RNAseq_workshop_2024

  Public archive
  HTML

  •11 fork•11 star•11 issue•00 pull requests•Updated Aug 15, 2025Aug 15, 2025

• somatic-pipeline

  Public
  A patient-level WES analysis pipeline combining variant calling (Mutect2, Strelka2, VarScan2 and multiSNP), clonality inference, CNV analysis, and mutation sign…

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 14, 2025Aug 14, 2025

• SingleCell_Multiomics_Danio_rerio

  Public
  This repository contains the analysis of single cell multiomics of Danio rerio

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 26, 2025Jun 26, 2025

• bio-ansible

  Public
  Proof of concept to use ansible + Lmod to deploy a bioinformatics server

  ansiblebioinformatics

  ansiblebioinformatics

  Jinja

  •

  Apache License 2.0

  •1616 forks•2525 stars•11 issue•00 pull requests•Updated Jun 5, 2025Jun 5, 2025

• fqdemux

  Public
  A simple Nextflow pipeline for demultiplexing FASTQs

  Nextflow

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 4, 2025Jun 4, 2025

• varistran

  Public
  R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data

  R

  •

  GNU Lesser General Public License v2.1

  •33 forks•2121 stars•00 issues•00 pull requests•Updated May 23, 2025May 23, 2025

• .github

  Public
  the github for Monash Bioinformatics Platform is the repository for the Bioinformatics Node of Monash Genomics and Bioinformatics Platform.

  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 4, 2025Mar 4, 2025

• polyApipe

  Public
  polyApipe

  R

  •

  GNU Lesser General Public License v2.1

  •88 forks•1919 stars•55 issues•00 pull requests•Updated Feb 10, 2025Feb 10, 2025

• laxyapi-r

  Public
  Interace with the Laxy REST API in R. Download your job files.

  R

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Dec 13, 2024Dec 13, 2024

• r-intro-resbazvic2024

  Public
  Introduction to R workshop material for ResBaz Victoria 2024

  rworkshop

  rworkshop

  R

  •1414 forks•00 stars•00 issues•00 pull requests•Updated Dec 11, 2024Dec 11, 2024

• Functional_Enrichment_BioCommons_2024

  Public
  Materials and resources for a 2-day workshop on functional enrichment analysis, organised by Australian BioCommons and delivered by Monash University and the Un…

  HTML

  •33 forks•33 stars•00 issues•00 pull requests•Updated Nov 21, 2024Nov 21, 2024

• VEPvcf_parser

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 12, 2024Nov 12, 2024

• provean

  Public archive
  Fork of Provean tool from : http://provean.jcvi.org

  C++

  •

  Other

  •11 fork•77 stars•00 issues•00 pull requests•Updated Aug 13, 2024Aug 13, 2024

• LFQ-Analyst

  Public
  The repo for LFQ-Analyst

  statistical-analysisproteomicsmass-spectrometry+ 1

  statistical-analysisproteomicsmass-spectrometryshinydashboard

  HTML

  •

  GNU General Public License v3.0

  •1414 forks•3030 stars•55 issues•00 pull requests•Updated Aug 7, 2024Aug 7, 2024

• containers

  Public
  A repository for all our tool Dockerfiles

  Dockerfile

  •

  MIT License

  •00 forks•00 stars•22 issues•00 pull requests•Updated Jul 12, 2024Jul 12, 2024

• Nov2023_scRNAseq_workshop

  Public
  HTML

  •22 forks•00 stars•11 issue•00 pull requests•Updated May 5, 2024May 5, 2024

• enrichment_analysis_workshop_2024

  Public
  A base for enrichment analysis workshop material

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 20, 2024Mar 20, 2024

• enrichment_analysis_workshop

  Public
  A base for enrichment analysis workshop material

  HTML

  •11 fork•22 stars•11 issue•00 pull requests•Updated Mar 15, 2024Mar 15, 2024