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    11 repositories

    • ENA_tool

      Public
      Convenient dowloader of raw files for ENA.
      Python
      •
      MIT License
      •2•2•2•0•Updated Oct 24, 2025Oct 24, 2025

    • COVIDBIOTA_PAPER

      Public
      code to reproduce analysis from the paper "Microbial communities of the upper respiratory tract in mild and severe COVID-19 patients: a possible link with the d…
      R
      •0•0•0•0•Updated Dec 1, 2021Dec 1, 2021

    • batch_effect_correction

      Public
      R
      •0•0•0•0•Updated Feb 17, 2021Feb 17, 2021

    • CPT2DM_project

      Public
      The project contains files for Balmasova et al. "The features of gingival sulcus microbiome in patients with chronic periodontitis associated with type 2 diabet…
      R
      •0•0•0•0•Updated Jan 22, 2021Jan 22, 2021

    • RECAST_project

      Public
      The project contains files for Olekhnovich et al, "Separation of donor and recipient microbial diversity allow to determine taxonomic and functional features of…
      R
      •0•0•0•0•Updated Jan 15, 2021Jan 15, 2021

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.9k•0•0•0•Updated Oct 14, 2020Oct 14, 2020

    • ImGQFinder

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 15, 2020Sep 15, 2020

    • chocophlan_tree

      Public
      Scripts to build a tree of genomes from chocophlan database
      Jupyter Notebook
      •0•0•0•0•Updated Jun 30, 2020Jun 30, 2020

    • sci2017_analysis

      Public
      Data and analysis scripts for Matson et al. 2017 manuscript
      Jupyter Notebook
      •
      Apache License 2.0
      •9•0•0•0•Updated Apr 10, 2020Apr 10, 2020

    • prepare-KEGG-for-humann2

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Apr 10, 2020Apr 10, 2020

    • uc_fmt

      Public
      Code and data to accompany a publication about the dynamics of fecal transplant in ulcerative colitis patients
      Jupyter Notebook
      •1•0•0•0•Updated Mar 10, 2020Mar 10, 2020
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