Repositories list

• methylation_dynamics_tnbc

  Public
  Code used for the analyses implemented in methylation dynamics in TNBC paper

  Jupyter Notebook

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  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 24, 2026Feb 24, 2026

• SCORPI

  Public
  11 fork•00 stars•00 issues•00 pull requests•Updated Feb 11, 2026Feb 11, 2026

• PredImm

  Public
  Immune predictor on tnbc

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 5, 2026Feb 5, 2026

• ERpHER2n-Basal_study

  Public
  This repository contains the analysis scripts and supporting code used in the study: “Molecular profiling of the Basal-like intrinsic molecular subtype in prim…

  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 3, 2025Nov 3, 2025

• TMArQ

  Public
  A pipeline for quantification of antibody staining in TMA cores.

  Python

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 23, 2025Jul 23, 2025

• PureBeta

  Public
  Method for calculating tumor purity and adjusting Illumina 450/850K DNA methylation beta values.

  R

  •

  GNU General Public License v3.0

  •00 forks•11 star•11 issue•00 pull requests•Updated Mar 28, 2025Mar 28, 2025

• HER2E_NatCom

  Public
  R

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 7, 2025Jan 7, 2025

• HER2E_study

  Public
  R

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jan 6, 2025Jan 6, 2025

• SRIQ

  Public
  Implementation of SRIQ clustering

  Jupyter Notebook

  •22 forks•66 stars•00 issues•00 pull requests•Updated Jan 8, 2024Jan 8, 2024

• ERpHER2n_HER2E

  Public
  R

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Dec 5, 2023Dec 5, 2023

• SJSSP

  Public
  Java based SSP

  22 forks•00 stars•00 issues•00 pull requests•Updated May 29, 2023May 29, 2023

• ParallelMapping

  Public
  GNU General Public License v3.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Oct 26, 2022Oct 26, 2022

• ChromView

  Public
  Circular to Linear summary view

  Java

  •22 forks•00 stars•00 issues•00 pull requests•Updated Oct 13, 2022Oct 13, 2022

• RadarPlot

  Public
  RadarPlot

  Java

  •22 forks•00 stars•00 issues•00 pull requests•Updated Oct 12, 2022Oct 12, 2022

• sspbc

  Public
  Single-Sample Predictors for Breast Cancer (sspbc) include functions and models to assign classes to breast cancer samples using gene expression data.

  GNU General Public License v3.0

  •11 fork•77 stars•11 issue•00 pull requests•Updated Aug 18, 2022Aug 18, 2022

• tcgaBrca

  Public
  TCGA BRCA data

  R

  •00 forks•33 stars•00 issues•00 pull requests•Updated Jun 1, 2022Jun 1, 2022

• adjustBetas

  Public
  Method for correcting Illumina 450/850K methylation beta-values

  R

  •00 forks•22 stars•11 issue•00 pull requests•Updated May 4, 2022May 4, 2022

• CLAMS-pan-cancer

  Public
  R code used for analysis and generating figures of article 'Pan-cancer application of a lung-adenocarcinoma-derived gene-expression-based prognostic predictor' …

  R

  •

  GNU General Public License v3.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Jun 29, 2021Jun 29, 2021