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@focolab Foundations of Cognition Lab

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    20 repositories

    • eats-worm

      Public
      Jupyter Notebook
      •
      MIT License
      •6•1•14•0•Updated Mar 17, 2026Mar 17, 2026

    • npex

      Public
      NeuroPal EXtractor
      Python
      •
      MIT License
      •2•1•0•0•Updated Jan 6, 2026Jan 6, 2026

    • ndx-multichannel-volume

      Public
      Pynwb extension to support mutlichannel volumetric imaging
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Jan 6, 2026Jan 6, 2026

    • lif-timelapse-to-mp4

      Public
      Small utility to generate reasonably high-quality MP4s from Leica software time-series.
      Scala
      •
      Apache License 2.0
      •1•0•0•0•Updated Nov 14, 2025Nov 14, 2025

    • 2025-dunn-et-al-curr-biol

      Public
      Code accompanying Dunn et al. 2025 Curr Biol
      Jupyter Notebook
      •0•0•0•0•Updated Oct 15, 2025Oct 15, 2025

    • SurfDist

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Sep 24, 2025Sep 24, 2025

    • SurfDist_Models

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 11, 2025Jul 11, 2025

    • WormND

      Public
      Code for reproducing results and figures for WormND benchmark
      Jupyter Notebook
      •2•2•0•1•Updated Feb 7, 2025Feb 7, 2025

    • NWBelegans

      Public
      Tutorials and examples of converting C. elegans optophysiology data to NWB data format
      Jupyter Notebook
      •11•3•2•0•Updated Nov 4, 2024Nov 4, 2024

    • NP-image-eval

      Public
      Code to evaluate and compare NeuroPAL images
      Jupyter Notebook
      •0•0•0•0•Updated Jul 29, 2024Jul 29, 2024

    • image-processing

      Public
      Jupyter Notebook
      •0•0•5•0•Updated Jul 29, 2024Jul 29, 2024

    • wormid-website

      Public
      Website for storing access links to worm data and code repositories
      HTML
      •0•0•0•0•Updated Mar 29, 2024Mar 29, 2024

    • biquadratic-implicitization

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 5, 2023Jan 5, 2023

    • qwiktiff

      Public
      Fast loading of large, multi-file tiff datasets
      Python
      •0•0•0•0•Updated Jun 3, 2022Jun 3, 2022

    • worm-locomotion-control

      Public
      analysis of worm locomotion
      Python
      •0•0•0•0•Updated Jan 25, 2022Jan 25, 2022

    • minimo

      Public
      EJS
      •
      MIT License
      •2•5•8•0•Updated Nov 3, 2021Nov 3, 2021

    • sleep-classifier

      Public
      mouse sleep state classification using EEG and EMG recordings
      Python
      •
      MIT License
      •1•1•0•0•Updated Jun 16, 2020Jun 16, 2020

    • ribo-gcamp

      Public
      code for ribo-gcamp project
      Jupyter Notebook
      •0•1•0•0•Updated Jun 4, 2020Jun 4, 2020

    • goodplot

      Public
      templates for making good plots in python
      Jupyter Notebook
      •0•0•0•0•Updated Jul 14, 2019Jul 14, 2019

    • connectome

      Public
      C elegans connectomics
      MATLAB
      •0•2•0•0•Updated Nov 24, 2014Nov 24, 2014
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