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@ghruproject Global Health Research Unit - Genomic Surveillance of Antimicrobial Resistance

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    5 repositories

    • GenepiK

      Public
      An R package to perform genomics epidemiology
      HTML
      •
      GNU General Public License v3.0
      •1•0•0•1•Updated Apr 27, 2026Apr 27, 2026

    • amrfindertomr

      Public
      Converts amrfinder plus into a nice smmry table for microreact
      Python
      •
      MIT License
      •2•1•0•0•Updated Apr 17, 2026Apr 17, 2026

    • GHRU-assembly

      Public
      Nextflow
      •2•0•6•0•Updated Jan 27, 2026Jan 27, 2026

    • bactscout

      Public
      BactScout is a high-performance Python pipeline for rapid quality assessment, taxonomic profiling, and MLST-based quality control of bacterial sequencing data.
      bioinformaticsquality-controlgenomics
      bioinformaticsquality-controlgenomics
      Python
      •
      GNU General Public License v3.0
      •1•3•6•0•Updated Dec 11, 2025Dec 11, 2025

    • qc_assembly_notebook

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 27, 2025Oct 27, 2025
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