Repositories list

• epiwave-visualiation-gadget

  Public
  Repository for the development of a visualisation gadget for epiwave universe.

  00 forks•00 stars•1010 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• frog-microclim

  Public
  toy example of obtaining microclimatic covariates to model habitat condition of frogs in SE Australia

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• sdmtools

  Public
  Helper functions for workflows used in modelling species distributions

  R

  •

  Other

  •33 forks•99 stars•2626 issues•00 pull requests•Updated Mar 4, 2026Mar 4, 2026

• conmat

  Public
  Create Contact Matrices from Population Data

  rpublic-healthinfectious-diseases+ 2

  rpublic-healthinfectious-diseasescontact-matricespopulation-data

  R

  •

  Other

  •44 forks•2121 stars•2929 issues•66 pull requests•Updated Feb 24, 2026Feb 24, 2026

• epiwave

  Public
  lowest-level functional interface for GPreff

  R

  •

  Apache License 2.0

  •55 forks•22 stars•2121 issues•00 pull requests•Updated Jan 5, 2026Jan 5, 2026

• epi-simulation

  Public
  in-dev space for building an R package for simulating disease transmission dynamics and observations

  HTML

  •

  MIT License

  •00 forks•11 star•33 issues•11 pull request•Updated Nov 3, 2025Nov 3, 2025

• ir_cube

  Public
  R

  •77 forks•00 stars•11 issue•00 pull requests•Updated Oct 31, 2025Oct 31, 2025

• vector_sdm_course

  Public
  R

  •

  Creative Commons Attribution 4.0 International

  •77 forks•22 stars•44 issues•11 pull request•Updated Sep 24, 2025Sep 24, 2025

• vector_atlas_training_resources

  Public
  Hub for curated modelling & data training resources relevant to collaborators of the Vector Atlas.

  MIT License

  •00 forks•44 stars•00 issues•00 pull requests•Updated Sep 10, 2025Sep 10, 2025

• idpalette

  Public
  R

  •

  Other

  •11 fork•55 stars•33 issues•00 pull requests•Updated Aug 21, 2025Aug 21, 2025

• traveltime

  Public
  Create maps of the time to travel from a user-supplied set of locations

  timetraveltimetravel+ 1

  timetraveltimetraveltraveltime

  PostScript

  •

  Other

  •33 forks•1212 stars•55 issues•00 pull requests•Updated Aug 11, 2025Aug 11, 2025

• epiwave.pipelines

  Public
  R

  •33 forks•00 stars•1414 issues•00 pull requests•Updated Jul 7, 2025Jul 7, 2025

• epiwave.params

  Public
  Helper functions for building epidemiological parameter distributions

  R

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jul 7, 2025Jul 7, 2025

• covid19_behaviour_australia

  Public
  R

  •00 forks•00 stars•11 issue•00 pull requests•Updated Apr 7, 2025Apr 7, 2025

• behaviour.change.analysis

  Public
  R

  •

  Other

  •00 forks•00 stars•33 issues•00 pull requests•Updated Mar 25, 2025Mar 25, 2025

• behavioral_survey_data_processing

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 17, 2025Mar 17, 2025

• va_training_spatial_pp_model

  Public
  R

  •

  MIT License

  •99 forks•00 stars•00 issues•00 pull requests•Updated Feb 28, 2025Feb 28, 2025

• simulation_entomo_baci

  Public
  Basic simulation for teaching

  R

  •1111 forks•00 stars•00 issues•00 pull requests•Updated Feb 27, 2025Feb 27, 2025

• VA_training-infection_simulation

  Public
  Infections simulation for Vector Atlas trianing

  R

  •1010 forks•00 stars•00 issues•00 pull requests•Updated Feb 24, 2025Feb 24, 2025

• neuts2efficacy

  Public
  modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission

  R

  •

  MIT License

  •44 forks•00 stars•00 issues•00 pull requests•Updated Feb 19, 2025Feb 19, 2025

• map-ir-pipeline

  Public
  Prototype demonstration of stacked generalisation method used in https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3000633#sec010

  R

  •22 forks•44 stars•3636 issues•22 pull requests•Updated Jan 30, 2025Jan 30, 2025

• epiwave.mapping

  Public
  What the Package Does (One Line, Title Case)

  R

  •33 forks•33 stars•77 issues•11 pull request•Updated Dec 20, 2024Dec 20, 2024

• .github

  Public
  11 fork•00 stars•00 issues•00 pull requests•Updated Dec 10, 2024Dec 10, 2024

• vector_atlas_training_2024

  Public
  R

  •00 forks•11 star•22 issues•00 pull requests•Updated Nov 29, 2024Nov 29, 2024

• anopheles_stephensi_expansion

  Public
  R

  •

  MIT License

  •22 forks•11 star•00 issues•00 pull requests•Updated Nov 18, 2024Nov 18, 2024

• syncomat

  Public
  Synthetically generated contact matrices for 200 countries using the R package conmat

  R

  •11 fork•22 stars•77 issues•00 pull requests•Updated Jul 23, 2024Jul 23, 2024

• idem-lab.r-universe.dev

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated May 31, 2024May 31, 2024

• conmat-paper

  Public
  Publication ideas for the conmat package

  00 forks•00 stars•00 issues•00 pull requests•Updated May 14, 2024May 14, 2024

• little-git-workshop

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 14, 2024Feb 14, 2024

• code-review

  Public
  Where we write notes and ideas for code review in the IDEM group

  11 fork•00 stars•22 issues•00 pull requests•Updated Feb 6, 2024Feb 6, 2024