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reproducible scripts for figures 2 and 3#1

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leberhartphillips wants to merge 10 commits intomainfrom
fig2_3_LEH
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reproducible scripts for figures 2 and 3#1
leberhartphillips wants to merge 10 commits intomainfrom
fig2_3_LEH

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@leberhartphillips
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See figure2_b.R and figure3_b.R scripts for the code to generate figure2_.png and figure3_b.png, respectively. I added a few annotations to the plots outside of R (e.g., labels of swirls, sihouettes, etc.) – the finalized figures are Fig2.png and Fig3.png. I experiemented with Codex to assist with the function construction of these plots.

@valcu
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valcu commented Apr 27, 2026

Hey, thanks for this. I’m going to close the PR since it doesn’t fit the package structure we need for CRAN. The figures code is going into /R/, but that should only contain functions. Scripts for paper figures should live outside the package. It also adds a bunch of unnecessary dependencies, which we should avoid for CRAN.

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