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4 changes: 4 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,10 @@

## Unreleased — root and README navigation cleanup

- Close the v1.2.12 publication provenance with Zenodo version DOI
`10.5281/zenodo.21895917`, Concept DOI `10.5281/zenodo.15879392`, and the
immutable `paper-local-ode-v1.6` GitHub Release. This metadata-only closure
changes no manuscript or theorem-bearing asset.
- Archive the independently reviewed v1.2.12 textual manuscript revision and
source ZIP as a recommended reading version. This incorporates the recorded
v1.2.9 errata and subsequent textual clarifications, preserves all v1.2.9
Expand Down
7 changes: 4 additions & 3 deletions CITATION.cff
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Expand Up @@ -19,8 +19,9 @@ preferred-citation:
given-names: "Y. Y. N."
orcid: "https://orcid.org/0009-0002-6471-139X"
year: 2026
doi: "10.5281/zenodo.21882158"
url: "https://zenodo.org/records/21882158"
# Historical version DOI retained for repository boundary checks:
doi: "10.5281/zenodo.21895917"
url: "https://zenodo.org/records/21895917"
# All-versions Concept DOI: 10.5281/zenodo.15879392
# Historical version DOIs are retained in docs/MANUSCRIPT_PROVENANCE.md.
# doi: "10.5281/zenodo.21728432"
# url: "https://zenodo.org/records/21728432"
21 changes: 12 additions & 9 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -33,8 +33,9 @@ identifies the earlier public manuscript boundary; it is not the preferred
current-manuscript citation. The v1.2.9 DOI
[10.5281/zenodo.21882158](https://doi.org/10.5281/zenodo.21882158) and
[`paper-local-ode-v1.5`](https://github.com/papasop/Geometric-Flow/releases/tag/paper-local-ode-v1.5)
remain immutable historical records. The v1.2.12 tag, GitHub Release, and
Zenodo version DOI are pending.
remain immutable historical records. The recommended v1.2.12 release is
archived at [10.5281/zenodo.21895917](https://doi.org/10.5281/zenodo.21895917)
and [`paper-local-ode-v1.6`](https://github.com/papasop/Geometric-Flow/releases/tag/paper-local-ode-v1.6).
The historical raw record URL `https://zenodo.org/records/21728432` is not the
current paper record.

Expand All @@ -44,6 +45,8 @@ current paper record.
| --- | --- |
| Read the recommended v1.2.12 manuscript | [`docs/manuscript/geometric_flow_v1_2_12_freeze_candidate.pdf`](docs/manuscript/geometric_flow_v1_2_12_freeze_candidate.pdf) |
| Inspect the matching v1.2.12 source ZIP | [`docs/manuscript/geometric_flow_v1_2_12_source.zip`](docs/manuscript/geometric_flow_v1_2_12_source.zip) |
| Cite the recommended v1.2.12 public version | [Zenodo DOI `10.5281/zenodo.21895917`](https://doi.org/10.5281/zenodo.21895917) |
| Download the matching GitHub release | [GitHub Release `paper-local-ode-v1.6`](https://github.com/papasop/Geometric-Flow/releases/tag/paper-local-ode-v1.6) |
| Audit the historical v1.2.9 public release | [GitHub Release `paper-local-ode-v1.5`](https://github.com/papasop/Geometric-Flow/releases/tag/paper-local-ode-v1.5) |
| Verify the published theorem boundary | [`python reproduce/published_paper.py`](reproduce/published_paper.py) |
| Follow the proof and certificate map | [Proof navigation](docs/PROOF_NAVIGATION.md) |
Expand Down Expand Up @@ -243,11 +246,12 @@ Historical and archive material:
## Citation And Licences

The recommended reading version is the frozen v1.2.12 manuscript archived in
this repository. Its tag, GitHub Release, Zenodo version DOI, and release
commit are pending until publication:
this repository and published through the following immutable release records:

- PDF: [`docs/manuscript/geometric_flow_v1_2_12_freeze_candidate.pdf`](docs/manuscript/geometric_flow_v1_2_12_freeze_candidate.pdf)
- source ZIP: [`docs/manuscript/geometric_flow_v1_2_12_source.zip`](docs/manuscript/geometric_flow_v1_2_12_source.zip)
- DOI: [10.5281/zenodo.21895917](https://doi.org/10.5281/zenodo.21895917)
- GitHub Release: [`paper-local-ode-v1.6`](https://github.com/papasop/Geometric-Flow/releases/tag/paper-local-ode-v1.6)

Historical v1.2.9 public archive:

Expand All @@ -259,13 +263,12 @@ The historical version DOI
identifies the earlier public manuscript boundary; it is not the preferred
current-manuscript citation.

Suggested citation for the local theorem and published paper boundary: until
the v1.2.12 Zenodo version DOI is created, cite the repository commit or
Draft/PR archive for v1.2.12 and identify the theorem-bearing software
boundary as v0.7.4 + v0.9.3.
Suggested citation for the local theorem and published paper boundary: cite
v1.2.12 using DOI `10.5281/zenodo.21895917` and identify the theorem-bearing
software boundary as v0.7.4 + v0.9.3.

Software is released under the [MIT license](LICENSE). The v1.2.12 manuscript
and manuscript source ZIP are intended to be released under Creative Commons Attribution 4.0
and manuscript source ZIP are released under Creative Commons Attribution 4.0
International (CC BY 4.0).

## 中文概览
Expand Down
16 changes: 8 additions & 8 deletions SHA256SUMS.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,12 +4,12 @@ ec1da81e6808bba8c8c200fdec8574155ef502d8afc52a1e97b3e4cd85db709c .github/workfl
41618318ff4a948ba9f4f4e8c3c457babedc2898c28cf9292f5871ba0cc57b01 .github/workflows/structural-checks.yml
60594ebf5896d74e31b82ca528943a991375fe4a00746824c75c709eeec49d7b .gitignore
f6cdb4e3b9127d32aee56cf66e86a9456ec3686e896696802073e6caf0ac3554 APPLY_GUIDE.md
a82298b6acdf6befcd1512ca61f249394c72cd0df36b3a095848cea35f74cc48 CHANGELOG.md
51588137343e718b6cb916c5c1bbe1a7f16b8ab994364c19b33ec952bdc3ad0b CITATION.cff
dbba6e441be3b187898fa66c42a8e7b83ba8ae823d107188469a14c6fb190811 CHANGELOG.md
e413b2323ce02f0622e59cdccbc4a777c4060dacbd1ecf2b7cbad5631d6ca493 CITATION.cff
648bfd6ec2edd62a06f951444efe44a05dbfb17565ca0194e0de7be8ca05a00e CONTROL_EXTENSION_SHA256SUMS.txt
6766e3773ab0cae72b57d2ff0260bb46e28f515c1a8fd46dc6e799c4c3e31315 LICENSE
0402018a16a3578b01f0db0027bb63ef40e82a64189258aea850e7d52dc8a277 PULSER_WIENER_SHA256SUMS.txt
d690a160fca6ae1997e876944879ef70d60a666398b1669aadc2719e27b88536 README.md
54f042519ac66276fc9936e39b3c6c3085c42a4a6c17829cb93443f33468533b README.md
666fad44e9d370466f43860cd4e04ebb48769fc1d92f88bbf3fc139c8e6a1cdb archive/milestones/01_local_foundation/response_fibre_arb_normal_root_v0_9_8_oneclick.py
13e34a4c8685ef538486b9708902c7138d5e34369605f7ec77df54c4d9cfc085 archive/milestones/01_local_foundation/response_fibre_normal_root_v0_9_7_oneclick.py
014d265a818bbd82c8aa8805317e61222ccf13136df871947a71ffa9e0e38291 archive/milestones/01_local_foundation/response_fibre_recenter_preflight_v0_9_6_oneclick.py
Expand Down Expand Up @@ -50,23 +50,23 @@ a0a524b34011e8646d19cfecc45ca52c0475efc8af6a5f62cd4e5c9459c6416e archive/milest
27c107ab01f254215fc6bda721bcbcf793c4856dde5791caef7f840fd5662c3c archive/milestones/superseded/v0_9_18/response_fibre_lohner_stress_v0_9_18_oneclick.py
885895c6205af597c68921365290aee363d388cbf4f84318b6533ad5044fbe74 docs/ARCHIVE_MIGRATION_PLAN.json
4cafc706613790855df4b6c3a50a030ed2275b3aa9fcf5bba5fe28b853bd2fdd docs/ARCHIVE_MIGRATION_PLAN.md
0102e98aac8934b1dac5e031252f63cb66b3c70c654a85fa982d16b4a9720d7e docs/ARTIFACT_INDEX.md
7a151c1beb9b6e5ff537acff67a9a18aca9acccd4d592cbfbde1b17bf6f2b97f docs/ARTIFACT_INDEX.md
666e7e6c793c10350663acfcbfb5558987f83e5e9b3f6c043d041b4de159ac0b docs/BACKEND_BINDING.md
8635644617c251a7818daa9ebd918bcb3cde7b0fce9df702176004d6340b7e10 docs/CERTIFICATE_DAG_SCOPE.md
d6f66ef3a23139381e3874bcebf0128afb0a5c9b5e9b2cbb311b4c816275618a docs/CLAIM_SCOPE.md
0420f5bdf41e68b027c0e114a0021d1acd02590744607947605e25fbcc18fc88 docs/CONTROL_EXTENSION_SCOPE.md
514babfd17b91394947921d61b2e83c395bd5d2b25f96bc5596ff0de7be34e81 docs/K1_BRIDGE_SCOPE.md
1469688fbdf85b2b5af5a8c184e298d0b1186d49030dd0d44b51ee3e1ee91ca2 docs/MANUSCRIPT_ERRATA_v1.2.9.md
271b44f2dab122bba60ff1158b277c373e38e15f2cad0627140c74941e618a7c docs/MANUSCRIPT_PROVENANCE.md
1536ead8639149fdd7759b31d320c750ae2f683b655b3e69e6ba5206ecb9e48d docs/MANUSCRIPT_PROVENANCE.md
6760fc98008920898d9aec408be2c540a07fa6751c6f4b5ce10beb007faf3b48 docs/MATHEMATICS.md
8f4338669bda381032abe0930a7fc7693f00b27c1d56a35753c1a7d2407e642e docs/MILESTONES.md
146d0227e86e5a9f47dc125402dcc5b9e5cd1d8bb3e14523bf589021939de841 docs/NEURAL_NETWORK_RESPONSE_FIBRES.md
550a1b36ab7e227788a2e036a3d2a8a66dcb8177e8c87aeca07e1d21d31452cb docs/PAPER_WORDING.md
3cd21823b52ac4e4a2d443cbafa4ddd8ce7b4de5af01a8aa8b0fc7910291afe6 docs/PAPER_WORDING.md
56aa37748de0f7563c0837c75265328e938cc9dee946df3f19822e70164b6218 docs/PROCESS_TIME_SCOPE.md
8984441d6c1ea7551ae6e2f1f207d0c48e13f24dbf73e29928018d9a4669278d docs/PROOF_GRAPH.md
07d00692d4ffb5c5b56b63cdd56ca74c508bca7f51a496b2d0a47232a784c5b7 docs/PROOF_MAP.md
69382d9ea7520f12efae49fe9b80c2d281e4072fe0ca112e7cd4a3a038c67727 docs/PROOF_NAVIGATION.md
f7c5537bf9952b21b93b434e7393dfa4949bfc69e555e21dca208fee077ca4fc docs/PUBLISHED_PAPER_BOUNDARY.md
dea911fa96b54d7c54617dc00461879d9b1b630a02bfa374a573ca469883e0c8 docs/PUBLISHED_PAPER_BOUNDARY.md
1e8dfc5f9bdb0934b9b460b56645355695af931296a789bfc26dc7e71d8a012e docs/REFERENCE_RESULTS.md
2b881e04bf643559402aeebb4ef69636eb461b84339abdfcc4f2f526ab67e384 docs/REPRODUCIBILITY.md
18ec360c6524fb2717cad75a506ba1eb5291703a25c47eb9a73ce6477486091b docs/RESEARCH_STATUS_MATRIX.md
Expand All @@ -89,7 +89,7 @@ a55f3b27fa94ef7648fa801e13bddf1557ecc192486b9cac20ec3cb8c6a460e3 docs/archive/U
6c6d842c8ca6a31631cee3f83e42f52d8accabe34950d8c8683ce457b35b713a docs/manuscript/geometric_flow_v1_2_9_source.zip
470d10aa1790fbe544e7299c469d3353fb9a415a739f27d3343de58eb2cfe784 docs/post_publication/C4_CONTROLLED_ATTRACTION_MILESTONE.md
18d5fc3bf65904ce83703632e4e9f1db4f21885d378c80d289f256e1c84cfce6 docs/post_publication/PULSER_WIENER_STABILITY_MAP_V1_3.md
1fb40ce6c7a74ccf0591cf0dd6edf57950ed19640c0c521ba6ed4365cba22770 docs/releases/RELEASE_NOTES.md
2e25463029da0c195e0844a5fecb342184c4dc8cb7fc576598a05e7ffa3d529b docs/releases/RELEASE_NOTES.md
bc56c153f62b62f591a8d5c96866b21931ec2aa76c3e75568415ac2c7927a953 docs/releases/RELEASE_NOTES_v0.10.14.1.md
d29f6506605725f022e9259ab27603977b682885bf36a221d068f330b3e9a81f docs/releases/RELEASE_NOTES_v0.10.5.md
cf39d28818c006a075dc02eff5e728bdc5e38baf85c5f0dde960cb76d23488c9 docs/releases/RELEASE_NOTES_v0.10.6.md
Expand Down
2 changes: 1 addition & 1 deletion docs/ARTIFACT_INDEX.md
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ before invoking the long versioned artifact. A mismatch fails closed.

| Manuscript archive | Primary artifact | Stored reference result | Claim boundary |
| --- | --- | --- | --- |
| v1.2.12 | `docs/manuscript/geometric_flow_v1_2_12_freeze_candidate.pdf`; `docs/manuscript/geometric_flow_v1_2_12_source.zip` | Recommended reading manuscript archive; release identifiers pending | Textual revision only; incorporates v1.2.9 errata; no theorem-bearing certificate, numerical gate, Arb rerun, or global-flow claim. |
| v1.2.12 | `docs/manuscript/geometric_flow_v1_2_12_freeze_candidate.pdf`; `docs/manuscript/geometric_flow_v1_2_12_source.zip` | Recommended public version: DOI `10.5281/zenodo.21895917`; GitHub Release `paper-local-ode-v1.6` | Textual revision only; incorporates v1.2.9 errata; no theorem-bearing certificate, numerical gate, Arb rerun, or global-flow claim. |
| v1.2.9 | `docs/manuscript/geometric_flow_v1_2_9_freeze_candidate.pdf`; `docs/MANUSCRIPT_ERRATA_v1.2.9.md` | Historical public Zenodo/GitHub release boundary | Immutable historical version DOI and erratum; theorem-bearing boundary remains v0.7.4 + v0.9.3. |

| Milestone | Primary artifact | Stored reference result | Claim boundary |
Expand Down
82 changes: 50 additions & 32 deletions docs/MANUSCRIPT_PROVENANCE.md
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ repository state, theorem-bearing software boundary, and public archive.
- Title: *Computation as Geometric Flow: An Arb-Certified Local Intrinsic ODE
on a Quantum-Control Response Fibre*
- Status: historical v1.1 candidate retained for audit history. The current
frozen manuscript is v1.2.9; see "v1.2.9 manuscript" below.
recommended reading manuscript is v1.2.12; see "v1.2.12 manuscript" below.
- PDF: `docs/manuscript/geometric_flow_submission_candidate_v1.1.pdf`
- PDF SHA-256:
`86edef125808640fc7c59b2ceec39d3fd36954b4b395b20f5949de13d0364b96`
Expand Down Expand Up @@ -154,17 +154,32 @@ frozen PDF above remains the archival manuscript.
- Arb rerun: not performed for this manuscript revision; the existing frozen
theorem certificates remain the governing numerical evidence.
- `GLOBAL_FLOW_CLAIMED`: false
- repository release tag: `PENDING_UNTIL_TAG`
- repository release tag: `paper-local-ode-v1.6`
- manuscript/tag mapping: `v1.2.12` manuscript ->
`PENDING_UNTIL_TAG` repository release.
- final release commit: `PENDING_UNTIL_RELEASE`
- repository commit: `PENDING_UNTIL_RELEASE`
- GitHub release URL: `PENDING_UNTIL_RELEASE`
- Zenodo version DOI: `PENDING_UNTIL_ZENODO_PUBLICATION`
- Zenodo DOI URL: `PENDING_UNTIL_ZENODO_PUBLICATION`
- source PR: `PENDING_UNTIL_RELEASE`
`paper-local-ode-v1.6` repository release.
- final release commit:
`9f00cef039a8b97598e06e87614f9b506a81cddc`
- repository commit:
`9f00cef039a8b97598e06e87614f9b506a81cddc`
- annotated tag object:
`e4da94c96f271d5eed63a1d18821476686de9aa3`
- peeled commit:
`9f00cef039a8b97598e06e87614f9b506a81cddc`
- GitHub release URL:
`https://github.com/papasop/Geometric-Flow/releases/tag/paper-local-ode-v1.6`
- Zenodo version DOI: `10.5281/zenodo.21895917`
- Zenodo DOI URL: `https://doi.org/10.5281/zenodo.21895917`
- all-versions Concept DOI: `10.5281/zenodo.15879392`
- source PR: `https://github.com/papasop/Geometric-Flow/pull/42`
- workflow URLs:
`PENDING_UNTIL_RELEASE`
- structural-checks:
`https://github.com/papasop/Geometric-Flow/actions/runs/31549636860`
- reproduce-validated-ode:
`https://github.com/papasop/Geometric-Flow/actions/runs/31549636994`
- reproduce-joint-geometric-flow:
`https://github.com/papasop/Geometric-Flow/actions/runs/31549636914`
- exact workflow commit for all three successful tag-triggered runs:
`9f00cef039a8b97598e06e87614f9b506a81cddc`

The v1.2.12 source archive contains its own `README_BUILD.md` and
`SOURCE_MANIFEST.md`. The archive manifest reports a clean three-pass
Expand All @@ -177,30 +192,33 @@ self-hash loop.
## Public archive and repository binding

- Historical Zenodo version DOI: `10.5281/zenodo.21728432`
- Zenodo version DOI: `10.5281/zenodo.21882158`
- Zenodo DOI URL: `https://doi.org/10.5281/zenodo.21882158`
- Previous Zenodo version DOI: `10.5281/zenodo.21882158`
- Current Zenodo version DOI: `10.5281/zenodo.21895917`
- current Zenodo DOI URL: `https://doi.org/10.5281/zenodo.21895917`
- all-versions Concept DOI: `10.5281/zenodo.15879392`
- GitHub release URL:
`https://github.com/papasop/Geometric-Flow/releases/tag/paper-local-ode-v1.5`
- immutable paper-boundary tag: `paper-local-ode-v1.5`
`https://github.com/papasop/Geometric-Flow/releases/tag/paper-local-ode-v1.6`
- immutable paper-boundary tag: `paper-local-ode-v1.6`
- annotated tag object:
`038ac83231af925725da8f9a2c9b10067053bcf6`
`e4da94c96f271d5eed63a1d18821476686de9aa3`
- peeled commit:
`8742913c3ba992db98b90bc79cd691a31199d1e7`
`9f00cef039a8b97598e06e87614f9b506a81cddc`
- repository commit:
`8742913c3ba992db98b90bc79cd691a31199d1e7`
`9f00cef039a8b97598e06e87614f9b506a81cddc`

The Zenodo version DOI `10.5281/zenodo.21882158` identifies the frozen v1.2.9
manuscript. The historical Zenodo version DOI `10.5281/zenodo.21728432` and
the public record `https://zenodo.org/records/21728432` identify an earlier
public manuscript version and boundary. The actual all-versions Concept DOI is
not recorded here because it has not been independently verified from the
authoritative Zenodo metadata.
The Zenodo version DOI `10.5281/zenodo.21895917` identifies the frozen v1.2.12
recommended reading manuscript. The preceding version DOI
`10.5281/zenodo.21882158` identifies v1.2.9, while the historical version DOI
`10.5281/zenodo.21728432` identifies an earlier public manuscript boundary.
Zenodo's authoritative record metadata identifies `10.5281/zenodo.15879392`
as the all-versions Concept DOI.

Observed GitHub tags during this update: `paper-local-ode-v1.0`,
`paper-local-ode-v1.1`, `paper-local-ode-v1.2`, `paper-local-ode-v1.3`, and
`paper-local-ode-v1.4` already exist. Do not move them. The annotated
`paper-local-ode-v1.5` tag was created and verified at the object and
peeled-commit identifiers recorded above; it must not be moved or reused.
`paper-local-ode-v1.5` historical tag remains immutable. The annotated
`paper-local-ode-v1.6` tag was verified at the object and peeled-commit
identifiers recorded above; it must not be moved or reused.

## Theorem-bearing boundary

Expand All @@ -216,13 +234,13 @@ peeled-commit identifiers recorded above; it must not be moved or reused.
## Reproduction record

- structural-checks workflow URL:
`https://github.com/papasop/Geometric-Flow/actions/runs/31452933116`
`https://github.com/papasop/Geometric-Flow/actions/runs/31549636860`
- validated-ODE workflow URL:
`https://github.com/papasop/Geometric-Flow/actions/runs/31452933117`
`https://github.com/papasop/Geometric-Flow/actions/runs/31549636994`
- joint v0.7.4 + v0.9.3 workflow URL:
`https://github.com/papasop/Geometric-Flow/actions/runs/31452933149`
`https://github.com/papasop/Geometric-Flow/actions/runs/31549636914`
- exact workflow commit:
`8742913c3ba992db98b90bc79cd691a31199d1e7`
`9f00cef039a8b97598e06e87614f9b506a81cddc`

The URLs above must refer to successful runs on the exact immutable submission
commit. An empty or unavailable status is not evidence of success.
Expand All @@ -233,6 +251,6 @@ commit. An empty or unavailable status is not evidence of success.
- manuscript licence: Creative Commons Attribution 4.0 International
(CC BY 4.0)

CC BY 4.0 governs the v1.2.9 manuscript and manuscript source archive. MIT
continues to govern the repository software. The two licences cover different
artifact classes.
CC BY 4.0 governs the v1.2.12 and historical v1.2.9 manuscripts and their
manuscript source archives. MIT continues to govern the repository software.
The two licences cover different artifact classes.
6 changes: 3 additions & 3 deletions docs/PAPER_WORDING.md
Original file line number Diff line number Diff line change
Expand Up @@ -14,9 +14,9 @@ Use v1.2.12 as the recommended reading version:
> immutable historical records.

Do not describe v1.2.12 as a new theorem, a certificate rerun, a global-flow
result, or a replacement for theorem-bearing software assets. Its repository
release tag, GitHub Release, and Zenodo version DOI remain pending until the
corresponding publication gates are actually completed.
result, or a replacement for theorem-bearing software assets. Cite the
published version as DOI `10.5281/zenodo.21895917`, bound to the immutable
GitHub Release `paper-local-ode-v1.6`.

## Layer I: Unconditional Local Theorem

Expand Down
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