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@parklab

Park Lab at Harvard Medical School

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  1. nozzle nozzle Public

    Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

    R 67 19

  2. NGSCheckMate NGSCheckMate Public

    Software program for checking sample matching for NGS data

    Python 139 57

  3. SigMA SigMA Public

    Mutational signature analysis for low statistics SNV data

    R 64 22

Repositories

Showing 10 of 50 repositories
  • parklab.github.io Public
    parklab/parklab.github.io’s past year of commit activity
    HTML 0 2 0 0 Updated Apr 21, 2026
  • xTea Public

    Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

    parklab/xTea’s past year of commit activity
    Python 124 24 13 2 Updated Apr 17, 2026
  • reference_genomes_decoy_analysis Public

    Scripts to analyze read alignment and variant calling from simulated and empirical data based on different human reference genome versions.

    parklab/reference_genomes_decoy_analysis’s past year of commit activity
    Shell 0 0 0 0 Updated Apr 16, 2026
  • SMaHT_SNV_COLO829BLT50_HAPMAP Public
    parklab/SMaHT_SNV_COLO829BLT50_HAPMAP’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated Apr 9, 2026
  • Illumina-TwoColorBias Public

    A repository containing code to correct T>N mutation bias in NovaSeq 6000 callsets

    parklab/Illumina-TwoColorBias’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 8, 2026
  • NanoSeq_parkLab Public Forked from cancerit/NanoSeq

    Analysis software for Nanorate Sequencing (NanoSeq) experiments -- forked over from Sanger Institute

    parklab/NanoSeq_parkLab’s past year of commit activity
    C++ 0 AGPL-3.0 15 0 0 Updated Apr 2, 2026
  • SMaHT_Regional_Categorization Public

    This repository has the description of the hg38 genome categorization of easy, difficult, and extreme region.

    parklab/SMaHT_Regional_Categorization’s past year of commit activity
    1 0 0 0 Updated Feb 25, 2026
  • SMaHT_Tissue_Benchmark_SmallVariants Public
    parklab/SMaHT_Tissue_Benchmark_SmallVariants’s past year of commit activity
    0 0 0 0 Updated Feb 3, 2026
  • KidsFirst_TE_pediatric_cancer Public
    parklab/KidsFirst_TE_pediatric_cancer’s past year of commit activity
    R 0 0 0 0 Updated Jan 29, 2026
  • denovo_retroelements_kids_first Public
    parklab/denovo_retroelements_kids_first’s past year of commit activity
    Python 0 0 0 0 Updated Jan 9, 2026
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