Index out of bounds exception when the allele is "-".#4
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fanavarro wants to merge 1 commit intophilres:masterfrom
Open
Index out of bounds exception when the allele is "-".#4fanavarro wants to merge 1 commit intophilres:masterfrom
fanavarro wants to merge 1 commit intophilres:masterfrom
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… to an illegal position in a list when writing vcf output. I have included default values for sizes and copy numbers to 0 to prevent the program crash.
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Just to comment, I do not know the implication of including these default values of "0" but, at least, the VCF file can be created without exception. |
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Bugfix: if allele is '-', the app throw an exception trying to access to an illegal position in a list when writing vcf output. I have included default values for sizes and copy numbers to 0 to prevent the program crash. Other option would be to skip the entries in which all the genotypes are "-".