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Improvements and refactoring for preprocessing and MCMC#1

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raymondEhlers wants to merge 17 commits intomainfrom
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Improvements and refactoring for preprocessing and MCMC#1
raymondEhlers wants to merge 17 commits intomainfrom
dev

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@raymondEhlers
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May need to be undone later, but good enough for now
There were multiple issues (enumerated below). Fortunately, they
approximately canceled, so it only slightly moves the central value and
slightly increases the size of the posterior.

The issues fixed were:
- We should have been reporting the quark qhat rather than the gluon
  qhat by convention
- There was an issue with passing the wrong alpha_s to the
  running_alpha_s calculation
Also noted in previous commits
(f7a55ed), but better to try to
make it easy to find the relevant information
Since we want it to be standalone, it's best if there's fewer imports
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