mmtf 1.0.11

Fixed

• Upgraded log4j dependency to patch several log4j vulnerabilities

mmtf 1.0.9

• 8x performance improvement in (non gzipped) mmtf reading, #49
• Msgpack dependency upgraded
• Builds and works in JRE 11

mmtf 1.0.8

• Bugfix: reduced encoder wasn't handling DOD as solvent
• Unit tests fix

mmtf 1.0.7

• The decoder now treats null strings as nulls, instead of "". Roundtrips of null strings would fail because of that.

mmtf 1.0.6

• Fixed issues with reduced encoder

mmtf 1.0.5

• Removed unnecessary ParseException introduced in 1.0.4

mmtf 1.0.4

• Faster MessagePack reading - replaced Jackson (probably slow because of reflection) with manual construction of objects, Jackson is still available, but the new solution is the default
• Faster parsing - moved computation from slow GenericDecoder.getNumBonds into constructor, which was invisible to profiler, but made parsing about 4x faster

Version 1.0.1 of mmtf

Changed

• Saccharides included in reduced format

Version 1.0.0 of mmtf

Changed

• Updated to the URL to the v1.0 version

Added

• API function to get a byte array from the URL

Bug fix release two of version 0.2

v0.2.2 - 2016-07-05

Changed

• Refactored the generation of Bioassemblies
• Refactored generateGroupMap to generateGroupList
• Update to the serialization module - only construct object mapper once

Added

• getBioassemblyName added to the API - return the BioassemblyName as a string.
• Tests for EncoderUtils