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Master on Bioinformatics and Computational Biology
By:
Abdul Khalek G., Naim
Cerdán Vélez, Daniel
Pozuelo Rollón, Blanca M.ª
Vázquez Parra, Juan José
Add ggmuller plots for oncosimulR. Plot types frequency and population were implemented.
Script for testing:
install.packages("devtools")
library(devtools)
install_github("juanjovazpar/OncoSimul/OncoSimulR", force = TRUE)
library(OncoSimulR)
data(examplesFitnessEffects)
simulation <- oncoSimulIndiv(examplesFitnessEffects[["o3"]],
model = "McFL",
mu = 5e-5,
detectionSize = 1e8,
detectionDrivers = 3,
sampleEvery = 0.025,
max.num.tries = 10,
keepEvery = 5,
initSize = 2000,
finalTime = 3000,
onlyCancer = FALSE,
keepPhylog = TRUE)
plot(simulation, type = "muller")
plot(simulation, type = "muller", muller.type="population")