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charging classify: add a sequence-model path — the GBM variant leaves +0.012 AUROC and half the FPR on the table

Status: Open.

#217 In rnabioco/escapepod-rs;

· jayhesselberth opened on Aug 15, 2026

classify: resolve arm offsets by counting query bases, per the bundle's features.resolution

Status: Open.

#212 In rnabioco/escapepod-rs;

· jayhesselberth opened on Aug 13, 2026

classify: the ref→query backfill can read the divergent 13-mer, and fabricates features for unaligned offsets

Status: Open.

#211 In rnabioco/escapepod-rs;

· jayhesselberth opened on Aug 13, 2026

charging classify: honour the bundle's abstain rule (emit a no-call, and report the no-call rate)

Status: Open.

#210 In rnabioco/escapepod-rs;

· jayhesselberth opened on Aug 13, 2026

charging classifier: move kmer-level primitives into escapepod-signal; classify needs POD5+BAM and writes cl

Status: Open.

#204 In rnabioco/escapepod-rs;

· jayhesselberth opened on Aug 10, 2026

demux detect: default to --method cnn; LLR must be opt-in, never a fallback

Status: Open.

#159 In rnabioco/escapepod-rs;

· jayhesselberth opened on Jul 27, 2026

Expose keep-last-N (and event count) under --warpdemux-compat so window width can be tuned

Status: Open.

#157 In rnabioco/escapepod-rs;

· jayhesselberth opened on Jul 27, 2026

Package escapepod for Bioconda

Status: Open.

#135 In rnabioco/escapepod-rs;

· jayhesselberth opened on Jul 20, 2026

Enable lazy remote POD5 reading (S3 + HTTPS via range requests)

enhancementNew feature or requestNew feature or request

Status: Open.

#83 In rnabioco/escapepod-rs;

· jayhesselberth opened on Jun 24, 2026

perf: tune dwell penalty DP inner loop cap for better performance

Status: Open.

#32 In rnabioco/escapepod-rs;

· jayhesselberth opened on Feb 4, 2026